FastQCFastQC Report
Tue 24 May 2016
ERR840990.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840990.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100457
Sequences flagged as poor quality0
Sequence length24-50
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC12661.2602407000009954No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA8750.8710194411539265No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT8300.8262241556088675No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAA5480.5455070328598306No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA4860.4837890838866381No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAA4820.47980728072707723No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAA4450.44297560150113974No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT4120.4101257254347631No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACT3910.3892212588470689No Hit
TTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG3720.37030769383915507No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3670.36533043988970404No Hit
AGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCACTTA3630.3613486367301432No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3560.3543804812009118No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA3550.35338503041102165No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3530.3513941288312412No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTT3150.31356699881541356No Hit
AAAAAAAAAAAAAAAAAAAAAAAA3000.2986352369670605No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2860.2846989259085977No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2810.2797216719591467No Hit
CCAGAGGGATTGGGCTGAGCAGACCCTCTCCTTGGTCTTCATTTTTTAA2790.2777307703793663No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2660.26478991011079367No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2350.23393093562419742No Hit
AGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCACT2250.2239764277252954No Hit
AAAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTT2220.22099007535562482No Hit
CATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCT2160.21501737061628357No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC2140.21302646903650319No Hit
TCCCTGGTGTGATTCCGTCCTGCGCGG2040.20307196113760118No Hit
ATGGATTCCAATAAGGCTTTCTTAGCCTGCCTCAGGAGGGAATGACTGTC1920.19112655165891873No Hit
CGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAATGGC1830.18216749454990694No Hit
AGTTCAGTTCACACGTGGCGCCAGCGGAGGCAGGTTGATGTGTTTGTGC1820.18117204376001672No Hit
TTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTG1780.1771902406004559No Hit
TCTTTTTTCGCCATCTTTTGTCTTTCCGTGGAGCTGTCGCCATGAAGGT1750.1742038882307853No Hit
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAA1730.1722129866510049No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA1720.1712175358611147No Hit
TGTACCCAACAGCTCATTGAGAACGGGCCATGATGACGATGGCGG1710.1702220850712245No Hit
ATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCAC1700.1692266342813343No Hit
TCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACAGT1690.16823118349144411No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACC1680.1672357327015539No Hit
CAAATGTCAGTTGATGTGAGGATTAAATATGATGATATCCTGGCTAATTT1680.1672357327015539No Hit
AATTGGCAGAGCCCTGGCAGCGTGATGAGGAAACAGACCCCATTCTGCAG1650.1642493803318833No Hit
TTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGC1620.1612630279622127No Hit
CCTTTCGGCCGGAACCGCCATCTTCCAGTAATTCGCCAAAATGACGAACA1620.1612630279622127No Hit
CCTATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTA1580.1572812248026519No Hit
CACTGAAAATCAACTTGCCGAGTCGAGGGTGCAGGTATGGTTTAAGAAT1580.1572812248026519No Hit
CCAGAGGGATTGGGCTGAGCAGACCCTCTCCTTGGTCTTCATTTTTT1580.1572812248026519No Hit
ACTTGAGGTCAGGAGTTCGAGAGCAGCCTGGCCAACATGGTGAAACTCTG1530.15230397085320088No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1520.15130852006331066No Hit
CTTCCTTTTTGTCCGACATCTTGACGAGGCTGCGGTGTCTGCTGCTATT1480.14732671690374988No Hit
ATCCTCCATATGCTGAACGCTGGTTCCCCGGTTCCCCTTATTTCTT1470.14633126611385966No Hit
AAGGCAGCTGCTGCAGCAGCGGCACTACAAGCCAAATCAGATGAGAAGGC1460.14533581532396947No Hit
CGGACATTAAAGTGAAGTGGTTGCGGTAACCTGGCCTGGGCCTGAAGTG1450.14434036453407925No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1440.14334491374418906No Hit
TCCTAGCCAGACAAATCAGTCAAGAGAAATAAAAGCCATGTACTTTGAAA1430.14234946295429884No Hit
AAAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTG1410.14035856137451846No Hit
AGAGCACATCCGGTGTTAGAAGCGCTGGCAGGCCTTGGAGAGGCGGGG1400.13936311058462825No Hit
AGATTTGCTCTCACTGCTCCCAAAAATGGCGG1400.13936311058462825No Hit
ATTTTCGTTGGTGGTGTTCAGTTGTGGCGG1400.13936311058462825No Hit
TCCCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTT1390.13836765979473806No Hit
CTAAACCTAGCCCCAAACCCACTCCACC1390.13836765979473806No Hit
TATACTTTAGAAGCCTTTGTCTTCCATTGTGGTCTTCGATATAACAGAGC1380.13737220900484784No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1350.13438585663517724No Hit
AATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAATGCT1350.13438585663517724No Hit
CATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTAT1340.13339040584528705No Hit
AGTGAACTGAGGGCCACCCTGGGAGGAAGCCGACTAGGCGAATTCA1330.13239495505539683No Hit
TGAGCCACTGCACCTACCCTGCCTCCCCTGCTATTTTTTGCTCTCATCAA1330.13239495505539683No Hit
TCTTCCTGCTCTCCATCATGGCGCAGGATCAAGGTGAAAAGGAGAACCCC1320.13139950426550664No Hit
CTCTTCCTGCTCTCCATCATGGCGG1290.12841315189583602No Hit
ATGGATTCCAATAAGGCTTTCTTAGCCTGCCTCAGGAGGGAATGACTG1280.12741770110594583No Hit
CGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAATG1270.12642225031605564No Hit
ACTGCAAGGTGCAGAAGATACACAAAATGGCACCAACTTCACTAGTG1250.12443134873627523No Hit
ATTAATCCCCTGGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGC1240.12343589794638501No Hit
AAGCGGGAGCGGCCAAAATGAAGTTTAATCCCTTTGTGACTTCCGACCGA1220.12144499636660461No Hit
AGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTC1210.12044954557671442No Hit
AAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTTTTT1210.12044954557671442No Hit
ATGATGAGGCTATTGTTTTTTGTGAATTCTTCGATAATGGCCCATTTGGG1200.11945409478682423No Hit
TGGAGGAGAAATCAAACATGATCCGGAAGTCACTGGAGATGTTGGAGC1200.11945409478682423No Hit
CCTGTATTTTTTTTAACAACATCCCCATTCCCCACCTGGTCCTCCCCCTT1190.11845864399693401No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1190.11845864399693401No Hit
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGC1180.11746319320704382No Hit
TCTTTTTTCGCCATCTTTTGTCTTTCCGTGGAGCTGTCGCCATGAAG1170.1164677424171536No Hit
TCTCCGCTCAACGATCCTTCCTCAAAGCATGGTTGCTGAGTACCCAG1160.11547229162726341No Hit
TTTTTTTGTTTCGGAGCGGGAGCTCTTCCGAGACGCACTGGGGGCCGGA1160.11547229162726341No Hit
CCAGAGGGATTGGGCTGAGCAGACCCTCTCCTTGGTCTTCATTTT1150.1144768408373732No Hit
CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAA1150.1144768408373732No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1140.113481390047483No Hit
ATAACCATGCACACTACTATAACCACCCTAACCCTAACTTCCCTAATTCC1120.1114904884677026No Hit
ACTCTGCGTCCTCGCCTCACCAGGAAACTACTAAAGTTCCTGGGGAAGCA1110.11049503767781241No Hit
TTGTACGGTAGAACTGCTATTATTCATCCTATGTGGGTAATTGAGGAGTA1110.11049503767781241No Hit
CAAGATGGCTGACTGAACAAAAGACACAGAAATGCCTGGTCCTGCTAATT1110.11049503767781241No Hit
CAGCAAAAAGGCGGAGCAAAAAAAGAAGGAGAAGATTATCGAAGACAAA1110.11049503767781241No Hit
AATTGGCAGAGCCCTGGCAGCGTGATGAGGAAACAGACCCCATTCTGC1100.10949958688792219No Hit
TGATTATCCTGAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCCTGT1090.108504136098032No Hit
AGCTCCTCACCCCACTTCAGGCTGAGCTGATGCGTATACTGAGGGAAG1090.108504136098032No Hit
CCTGGGTCTCGTCTTTGTGTCCTCATTGGGATCTATGTTTCTTCCAC1080.10750868530814178No Hit
AGATTATCGTGACATGATTCTGAAGCAAGTAGTCAATCAGGTGTGGGAAG1080.10750868530814178No Hit
TGAGCCACTGCACCTACCCTGCCTCCCCTGCTATTTTTTGCTCTCATC1070.10651323451825159No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1060.10551778372836138No Hit
CATTGCTGACTGTGTATATAGGATAATTATGAAAAGCAGTTCTGGATGGT1060.10551778372836138No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1060.10551778372836138No Hit
AGAAAAAGAAAACTCTGGCGTTAGAGGATATAGAAAAATATAAGTACA1060.10551778372836138No Hit
TCCCTGCCACACTCAGTCCCCCACCACACTGAATCTCCCCTCCTCACA1060.10551778372836138No Hit
TGGGTTTGGGGCTAGGTTTAGCAACCATTTACCCAAATAAAGTATAGGCG1060.10551778372836138No Hit
AAGGCAGCTGCTGCAGCAGCGGCACTACAAGCCAAATCAGATGAGAAG1060.10551778372836138No Hit
AAAGATAAAATTTGAAATCTGGTTAGGCTGGTGTTAGGGTTCTTTGTT1050.10452233293847119No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1050.10452233293847119No Hit
AGGAGCTAGGGAAAGAAAACCTGGAGTTTGTGCCAGGGTTTTTGGGATTA1040.103526882148581No Hit
CAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCC1040.103526882148581No Hit
CAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGA1040.103526882148581No Hit
CAAATGTCAGTTGATGTGAGGATTAAATATGATGATATCCTGGCTAAT1030.10253143135869078No Hit
AATTGATGATAACCTTGATGAAATTCCCGACGGGGAGATGCCTCAAGTTG1030.10253143135869078No Hit
ATAAGGAGATGGACAAACCGTGTGGGTGCCCTCCAGGTGTGTGTGA1030.10253143135869078No Hit
TGGAAATGCAGTTTAGCCATGTCCTCAAGATAAAGTCTTGGTAAAAAT1010.10054052977891037No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAGATA109.219811E-4285.596144
AAACTAG109.219811E-4285.596144
TATATCC109.219811E-4285.596144
ATCAGGA109.219811E-4285.596144
TAATTCC109.219811E-4285.596144
ATATCTT109.219811E-4285.596144
GGATGGT158.0505815E-6285.5960744
CGTGCGC256.0936145E-10285.5960744
TCACTTA550.0285.5960744
ACGAACA305.456968E-12285.5960744
ACTATCT256.0936145E-10285.5960744
GCCCTTA158.0505815E-6285.5960744
CGTTCTT305.456968E-12285.5960744
CTATCAT700.0244.7966344
TCACAGT252.1280721E-7228.4768544
ATTTCCC252.1280721E-7228.4768544
GAACCCC202.5373776E-5214.1970744
CTAATTT202.5373776E-5214.1970744
GACTGTC202.5373776E-5214.1970744
ATTTGGG202.5373776E-5214.1970744