Basic Statistics
Measure | Value |
---|---|
Filename | ERR840984.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8871982 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGCAAGTTTGAATTTCGTGGAGGCTCGGG | 33914 | 0.38225956725340515 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 23822 | 0.2685082093268449 | No Hit |
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAA | 15947 | 0.1797456306832002 | No Hit |
TTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 15467 | 0.1743353401753971 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 14750 | 0.16625371872936623 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 13441 | 0.15149940565704484 | No Hit |
ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA | 13010 | 0.14664141563858 | No Hit |
CAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCT | 12524 | 0.14116349649942933 | No Hit |
AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA | 12371 | 0.1394389664000671 | No Hit |
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCG | 10837 | 0.122148579652213 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9879 | 0.11135054151372263 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 9805 | 0.11051645506043632 | No Hit |
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAA | 9750 | 0.10989652593975055 | No Hit |
AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG | 9370 | 0.10561337928773976 | No Hit |
CGGCAAGTTTGAATTTCGTGGAGGCTCGGGTTGTGAGGG | 9258 | 0.10435097816925236 | No Hit |
CGGCAAGTTTGAATTTCGTGGAGGCTCGGGTTGTGAGGGTTCCTGCTT | 8945 | 0.10082301790062242 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGCG | 45 | 6.5949826E-6 | 115.53901 | 44 |
ACGGTCG | 60 | 2.7525515E-5 | 86.65427 | 44 |
AGGTACG | 50 | 0.0014491515 | 77.98884 | 44 |
CCTTAGC | 2805 | 0.0 | 71.329025 | 43 |
CGGACGG | 190 | 1.8189894E-11 | 61.570137 | 44 |
CTATCAT | 2525 | 0.0 | 60.743782 | 44 |
TATCGCA | 65 | 0.0041009486 | 59.991413 | 44 |
TCGTGCG | 2950 | 0.0 | 58.409096 | 43 |
TCGCGTT | 100 | 3.8198777E-11 | 56.804455 | 43 |
TTCGCGT | 100 | 0.0 | 54.839584 | 42 |
TACGCCC | 240 | 3.6379788E-12 | 54.158916 | 44 |
ACCTTAG | 2650 | 0.0 | 52.531384 | 42 |
TAACGGT | 230 | 1.1641532E-10 | 50.862286 | 44 |
GTTACGC | 20 | 4.263081E-4 | 49.81389 | 39 |
TCGACTA | 35 | 5.009303E-4 | 48.21062 | 42 |
GCGCATT | 40 | 0.0012532561 | 47.33704 | 43 |
ACTCGTG | 3270 | 0.0 | 45.49759 | 41 |
ACTTCTA | 2385 | 0.0 | 43.599632 | 44 |
GGTAAGT | 245 | 1.1430529E-8 | 42.442905 | 44 |
CGCGTAG | 50 | 5.6997138E-5 | 42.184296 | 42 |