FastQCFastQC Report
Tue 24 May 2016
ERR840979.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840979.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2806270
Sequences flagged as poor quality0
Sequence length24-50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC211290.75292113731038No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA138380.4931100713758833No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT118900.4236940850310198No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT82160.2927729691013338No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGC67610.24092478628214678No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC66620.23739697178104743No Hit
AGAGCTCGTATGCCGTCTTCTGCTTG50350.1794196566973242Illumina Single End Adapter 1 (100% over 26bp)
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA45020.160426473575244No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA44790.15960688030731185No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA38240.13626628941620014No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCC31840.11346021587373989No Hit
AGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA31060.11068072566075254Illumina Single End Adapter 1 (100% over 26bp)
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT30240.10775869748812482No Hit
ACTTTTTTTTTTTTTTTTTTTTTTTTTTT29600.10547809013387878No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA28270.10073870297583624No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGTCGA303.3105607E-10159.7641344
ACGCGTG253.990841E-6127.811344
CACGGTA202.6281676E-4119.8230944
CGTGCGC950.0109.31229444
AAACGGT200.001147881482.7025443
TCGTGCG2200.080.196443
CTATCAT23900.078.5451344
CGAACGG252.0452699E-673.98334542
CCCGAGC15200.072.52450644
CGCGGTA457.3854746E-571.0062844
AACGACA5050.066.5987543
CCTATCA20000.065.3350143
CTACCGC501.2442413E-463.9056544
ATGCGTC501.2442413E-463.9056544
CGGATAC351.3343683E-463.01145643
CCCTATC22200.061.3195342
TAACGGT407.220369E-459.91154544
AACGGTA400.00412180859.91154544
GCCCGAG12950.059.17968443
ACCTTAG30050.058.9650942