Basic Statistics
Measure | Value |
---|---|
Filename | ERR840979.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2806270 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 21129 | 0.75292113731038 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 13838 | 0.4931100713758833 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT | 11890 | 0.4236940850310198 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT | 8216 | 0.2927729691013338 | No Hit |
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGC | 6761 | 0.24092478628214678 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 6662 | 0.23739697178104743 | No Hit |
AGAGCTCGTATGCCGTCTTCTGCTTG | 5035 | 0.1794196566973242 | Illumina Single End Adapter 1 (100% over 26bp) |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 4502 | 0.160426473575244 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4479 | 0.15960688030731185 | No Hit |
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA | 3824 | 0.13626628941620014 | No Hit |
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCC | 3184 | 0.11346021587373989 | No Hit |
AGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA | 3106 | 0.11068072566075254 | Illumina Single End Adapter 1 (100% over 26bp) |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3024 | 0.10775869748812482 | No Hit |
ACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2960 | 0.10547809013387878 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA | 2827 | 0.10073870297583624 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGTCGA | 30 | 3.3105607E-10 | 159.76413 | 44 |
ACGCGTG | 25 | 3.990841E-6 | 127.8113 | 44 |
CACGGTA | 20 | 2.6281676E-4 | 119.82309 | 44 |
CGTGCGC | 95 | 0.0 | 109.312294 | 44 |
AAACGGT | 20 | 0.0011478814 | 82.70254 | 43 |
TCGTGCG | 220 | 0.0 | 80.1964 | 43 |
CTATCAT | 2390 | 0.0 | 78.54513 | 44 |
CGAACGG | 25 | 2.0452699E-6 | 73.983345 | 42 |
CCCGAGC | 1520 | 0.0 | 72.524506 | 44 |
CGCGGTA | 45 | 7.3854746E-5 | 71.00628 | 44 |
AACGACA | 505 | 0.0 | 66.59875 | 43 |
CCTATCA | 2000 | 0.0 | 65.33501 | 43 |
CTACCGC | 50 | 1.2442413E-4 | 63.90565 | 44 |
ATGCGTC | 50 | 1.2442413E-4 | 63.90565 | 44 |
CGGATAC | 35 | 1.3343683E-4 | 63.011456 | 43 |
CCCTATC | 2220 | 0.0 | 61.31953 | 42 |
TAACGGT | 40 | 7.220369E-4 | 59.911545 | 44 |
AACGGTA | 40 | 0.004121808 | 59.911545 | 44 |
GCCCGAG | 1295 | 0.0 | 59.179684 | 43 |
ACCTTAG | 3005 | 0.0 | 58.96509 | 42 |