##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR840977.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2498766 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 36.67027084568943 39.0 37.0 39.0 32.0 39.0 2 37.48026665962319 39.0 37.0 39.0 35.0 39.0 3 37.6556880476203 39.0 37.0 39.0 35.0 39.0 4 38.033116346228496 39.0 37.0 40.0 34.0 41.0 5 38.5418246446446 40.0 38.0 41.0 35.0 41.0 6 38.60778040040564 40.0 38.0 41.0 35.0 41.0 7 38.58323268365265 40.0 38.0 41.0 35.0 41.0 8 38.492981335587245 40.0 38.0 41.0 35.0 41.0 9 38.53182971114542 40.0 38.0 41.0 35.0 41.0 10 38.528063452119966 40.0 38.0 41.0 35.0 41.0 11 38.37069017266923 40.0 38.0 41.0 34.0 41.0 12 38.30071723402671 40.0 38.0 41.0 34.0 41.0 13 38.209681098590266 40.0 37.0 41.0 34.0 41.0 14 38.13591948986019 39.0 37.0 40.0 34.0 41.0 15 38.04851074490369 39.0 37.0 40.0 34.0 41.0 16 38.00948748302162 39.0 37.0 40.0 34.0 41.0 17 38.065123344883034 39.0 37.0 40.0 34.0 41.0 18 38.1351811254035 39.0 37.0 40.0 34.0 41.0 19 38.14370453255727 40.0 37.0 40.0 34.0 41.0 20 38.030743174831095 39.0 37.0 40.0 34.0 41.0 21 37.96334430674981 39.0 36.0 40.0 34.0 41.0 22 37.82798069126921 39.0 36.0 40.0 33.0 41.0 23 37.757239373354686 39.0 36.0 40.0 33.0 41.0 24 37.56758696092391 39.0 36.0 40.0 33.0 41.0 25 37.43301780753503 39.0 35.0 40.0 33.0 41.0 26 37.276935446585775 38.0 35.0 40.0 33.0 41.0 27 37.16923706998855 38.0 35.0 40.0 33.0 41.0 28 36.96954463188397 38.0 35.0 40.0 32.0 41.0 29 36.91624457069248 38.0 35.0 40.0 32.0 41.0 30 36.886839654799715 38.0 35.0 40.0 32.0 41.0 31 36.730340419143495 38.0 35.0 40.0 32.0 41.0 32 36.656493673956945 38.0 35.0 40.0 31.0 41.0 33 36.51259783907182 38.0 35.0 40.0 31.0 41.0 34 36.38340523531637 37.0 34.0 40.0 31.0 41.0 35 36.26257607394355 37.0 34.0 40.0 31.0 41.0 36 36.24798127099082 37.0 34.0 40.0 31.0 41.0 37 36.11754363098189 37.0 34.0 40.0 31.0 41.0 38 35.96736207979726 36.0 34.0 40.0 31.0 41.0 39 35.863831254597926 36.0 34.0 40.0 31.0 41.0 40 35.64279296005422 36.0 34.0 39.0 30.0 41.0 41 35.513068915442155 36.0 34.0 39.0 30.0 41.0 42 35.37968580108143 36.0 33.0 39.0 29.0 41.0 43 35.24944475440067 35.0 33.0 39.0 29.0 41.0 44 34.942119259481665 35.0 33.0 39.0 29.0 41.0 45 34.77446649366509 35.0 33.0 39.0 28.0 41.0 46 34.498074170687225 35.0 32.0 39.0 28.0 40.0 47 34.66004213425243 35.0 33.0 39.0 28.0 40.0 48 35.441802717327484 36.0 34.0 39.0 30.0 40.0 49 35.961428358528096 36.0 34.0 39.0 31.0 41.0 50 36.00872166445665 37.0 34.0 39.0 31.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 5.0 21 22.0 22 34.0 23 84.0 24 176.0 25 448.0 26 1033.0 27 2438.0 28 5344.0 29 11409.0 30 23037.0 31 43713.0 32 78321.0 33 130525.0 34 192142.0 35 225345.0 36 343818.0 37 446572.0 38 391744.0 39 376172.0 40 226384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 50.833411371853146 16.57125957372559 32.59532905442126 2 28.72409821487886 20.848290716297566 28.463489578455924 21.964121490367646 3 25.947407640411306 20.558267560868043 27.369069372642336 26.125255426078315 4 21.13006980245449 21.17517206493125 31.258028963096184 26.436729169518074 5 17.16963493180234 25.27919781204002 32.063026309786515 25.48814094637113 6 22.96945772433273 26.402472260307686 27.990336029864345 22.637733985495238 7 26.851293798618997 23.425963055364125 25.62116660783763 24.101576538179245 8 23.450575203920653 22.148892693433478 28.59519458804866 25.805337514597205 9 23.5962471075723 23.312266934959098 28.534324542594224 24.557161414874383 10 27.534430995139203 20.76544982603413 28.014988198174617 23.68513098065205 11 26.06978804738019 21.041746205927243 28.302810267147866 24.585655479544705 12 23.870142302240385 24.269019187871134 27.925504028788612 23.935334481099872 13 26.20985718550677 23.22490381252186 26.94982243235261 23.615416569618763 14 22.179507805052573 23.89995701878447 26.7008195245173 27.219715651645654 15 22.458125330663215 25.840034641098846 27.609548072928796 24.092291955309143 16 21.93630776151108 29.311107962890482 25.466610318853387 23.28597395674505 17 24.803362939947156 28.95497217426522 22.055286489411174 24.18637839637645 18 23.743599840881462 26.239831981065855 24.166288479993725 25.850279698058966 19 26.694616462685982 22.697443458090913 25.37756636675863 25.23037371246447 20 25.40874175493023 23.94053704908743 26.633226160432788 24.017495035549548 21 25.77912457589066 25.857323174719042 24.58813670427723 23.77541554511307 22 27.321245766910547 26.494637753194976 22.071214351403853 24.112902128490624 23 28.59359379789864 24.58209372146091 24.823612935344887 22.000699545295557 24 25.50586969728258 25.974180855670358 24.217593804301803 24.302355642745262 25 25.267591928195177 24.40222677694039 26.41353773491889 23.91664355994554 26 24.470023639073172 27.28857523067225 26.966559152539833 21.27484197771474 27 27.61925272323793 25.897191737852648 23.82448982416658 22.659065714742837 28 27.490971234295035 25.37686174707642 23.419166088267772 23.71300093036077 29 27.99813380456144 27.680839292497232 23.826196099156082 20.494830803785238 30 30.783850745772295 25.78044197608873 23.354354079715325 20.081353198423653 31 25.56968463028062 25.999826256519597 25.2089138839596 23.221575229240184 32 24.330761619130527 26.844736525691864 26.502294489104948 22.32220736607266 33 24.89351009756679 24.53589955345849 28.275459598155518 22.295130750819204 34 25.53037067228066 23.836370889886343 27.10429874842193 23.528959689411067 35 23.04630380038371 23.62325988662511 26.558969935447145 26.771466377544034 36 25.58986533054732 23.4673609819602 26.981281930663283 23.961491756829194 37 23.118497845421665 26.66829004948529 25.7068100175343 24.50640208755875 38 23.85066497715971 24.78685946922506 25.58272017718527 25.779755376429957 39 24.60504176156578 25.67164899112508 26.645839856600535 23.077469390708604 40 21.75847232311361 25.279526728757677 28.33827826315799 24.623722684970716 41 23.829036910231963 26.608230885764613 25.4871025442896 24.07562965971383 42 23.71970414940198 28.669664110023803 24.060314364218755 23.550317376355462 43 23.40021097704147 24.659000329913372 25.37903975200193 26.561748941043223 44 21.698439695051484 27.594489694311598 25.131234692070453 25.57583591856647 45 22.29003205617463 24.462168625655117 27.61756474838447 25.63023456978578 46 20.99754149449433 26.383688450795262 27.046388420785338 25.57238163392507 47 23.775894150402515 26.00202838084087 27.61552563373159 22.606551835025023 48 23.841372943811443 26.41589973437014 24.88897803217901 24.853749289639406 49 20.171579267937094 27.610266245925963 25.063532278025804 27.15462220811114 50 21.49028645997769 28.883048136221085 27.963524236492603 21.663141167308623 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 15001.0 1 14725.0 2 22809.5 3 30201.5 4 26959.5 5 17402.5 6 7764.5 7 5618.5 8 5396.0 9 4636.5 10 4204.5 11 3869.0 12 3411.5 13 3020.5 14 3003.5 15 3092.5 16 3037.5 17 2945.5 18 2786.0 19 3124.0 20 3820.5 21 4773.5 22 5962.0 23 7827.5 24 10094.0 25 11799.5 26 13722.5 27 15982.0 28 18775.5 29 22943.0 30 27847.5 31 36840.0 32 50256.5 33 57547.0 34 63694.5 35 73363.5 36 79285.5 37 82260.0 38 83971.5 39 93218.5 40 108505.0 41 117969.5 42 129626.0 43 148837.0 44 164543.0 45 172384.0 46 177337.0 47 186505.5 48 208025.0 49 237058.5 50 267489.0 51 281907.0 52 272242.5 53 250222.5 54 223930.5 55 214362.5 56 209904.0 57 196389.5 58 172594.0 59 145846.5 60 129478.5 61 113564.0 62 96658.0 63 78822.0 64 65370.0 65 58536.0 66 48358.5 67 35545.0 68 25822.0 69 19511.0 70 14597.5 71 10641.0 72 7885.5 73 5917.0 74 4177.0 75 3094.5 76 2523.5 77 1938.5 78 1710.5 79 1550.0 80 1361.5 81 989.0 82 500.5 83 264.0 84 172.0 85 104.5 86 69.5 87 53.5 88 34.0 89 26.0 90 38.0 91 48.5 92 42.5 93 42.0 94 25.5 95 8.5 96 8.0 97 8.0 98 4.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 13919.0 25 14784.0 26 13704.0 27 18595.0 28 15724.0 29 16480.0 30 34248.0 31 17629.0 32 21537.0 33 16030.0 34 14901.0 35 15990.0 36 14247.0 37 17066.0 38 15131.0 39 19673.0 40 20341.0 41 20911.0 42 28807.0 43 54138.0 44 129611.0 45 232540.0 46 277412.0 47 288687.0 48 395006.0 49 391567.0 50 380088.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.787539035995565 #Duplication Level Percentage of deduplicated Percentage of total 1 70.93458065973867 8.361441385286456 2 10.794343718858128 2.544774959079874 3 3.9742922797061335 1.4054137616247555 4 1.913174301541777 0.9020646704834899 5 1.1511839061685087 0.6784812615785576 6 0.7653738956429017 0.5413124803213619 7 0.5795768258320203 0.47822491211973395 8 0.4698091386870764 0.44303148493930933 9 0.34944013359620574 0.3707135293957902 >10 4.587740606419058 13.66423855859899 >50 2.636035893995214 22.49983224844314 >100 1.753992623591027 33.10319989046129 >500 0.05590414736545083 4.51007062034566 >1k 0.03144608289306609 7.035719320132554 >5k 0.0019411162279670425 1.550095095357603 >10k+ 0.0011646697367802257 1.9113858218314395 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGGCAAGTTTGAATTTCGTGGAGGCTCGGG 16064 0.6428773242472484 No Hit ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT 12913 0.5167750801795766 No Hit CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC 12791 0.5118926702220217 No Hit CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA 8567 0.3428492303801156 No Hit ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC 7597 0.30403006924217796 No Hit AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAA 6333 0.25344510050160757 No Hit TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTG 6060 0.24251970772773443 No Hit TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA 5316 0.21274501093739873 No Hit CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT 4744 0.1898537117921406 No Hit ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAGAA 4682 0.18737248705961262 No Hit TTGAGTTCCAGCCAGGAGGACCAGGGGCTGGG 4600 0.1840908672520756 No Hit ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA 4544 0.18184976104205036 No Hit TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACC 3533 0.14138979000034416 No Hit AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATG 3516 0.14070945418658648 No Hit TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC 3335 0.13346587875775484 No Hit ACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3216 0.12870352806145113 No Hit ACTTTTTTTTTTTTTTTTTTTTTTTTTTT 3112 0.1245414736714042 No Hit TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAACCTGC 3096 0.12390115761139699 No Hit CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA 3031 0.12129987361761765 No Hit AGGTTTTCTGTTTCCTGTGATACCTTGGGCTGGAATCTGAAGCAATGAAG 3029 0.12121983411011675 No Hit TAGCTGTTAGTTGGTAGAGGGAAATTCAGGCTACCGTCGCGAAA 3003 0.12017932051260503 No Hit ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2893 0.11577714760005538 No Hit AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG 2771 0.11089473764250035 No Hit ACCGCGGCCTCAGATGAATGCGGCTGTTAAGACCTGCAATAATCCAG 2579 0.10321094492241371 No Hit ACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2561 0.10249058935490557 No Hit ACTTTTTTTTTTTTTTTTTTTTTTTTTT 2534 0.10141005600364339 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.022731220130256295 0.0 0.0 0.0 0.0 2 0.04194070193047288 0.0 0.0 0.0 0.0 3 0.058508879983159685 0.0 0.0 0.0 0.0 4 0.07287597157957168 0.0 0.0 0.0 0.0 5 0.08712300391473231 0.0 0.0 0.0 0.0 6 0.11589720686130674 0.0 0.0 0.0 0.0 7 0.13374601703400799 0.0 0.0 0.0 0.0 8 0.1526753605579714 0.0 0.0 0.0 0.0 9 0.17120450654443034 0.0 0.0 0.0 0.0 10 0.18689225001460721 0.0 0.0 0.0 0.0 11 0.20334036880604267 0.0 0.0 0.0 0.0 12 0.22451081854003135 0.0 0.0 0.0 0.0 13 0.2406387793014632 0.0 0.0 0.0 0.0 14 0.256406562279141 0.0 0.0 0.0 0.0 15 0.2752558662956035 0.0 0.0 0.0 0.0 16 0.2947054666183228 0.0 0.0 0.0 0.0 17 0.31451524472479614 0.0 0.0 0.0 0.0 18 0.3430093093951174 0.0 0.0 0.0 0.0 19 0.3614984356278259 0.0 0.0 0.0 0.0 20 0.3831891421605705 0.0 0.0 0.0 0.0 21 0.4039994141108051 0.0 0.0 0.0 0.0 22 0.42232846132851176 0.0 0.0 0.0 0.0 23 0.444259286383759 0.0 0.0 0.0 0.0 24 0.4647894200577405 0.0 0.0 0.0 0.0 25 0.48648012659048506 0.0 0.0 0.0 0.0 26 0.5096115442582458 0.0 0.0 0.0 0.0 27 0.53038179645473 0.0 0.0 0.0 0.0 28 0.5539934511674963 0.0 0.0 0.0 0.0 29 0.5797261528290364 0.0 0.0 0.0 0.0 30 0.6035779260643054 0.0 0.0 0.0 0.0 31 0.6286703116658383 0.0 0.0 0.0 0.0 32 0.6553634874173893 0.0 0.0 0.0 0.0 33 0.6805359125264231 0.0 0.0 0.0 0.0 34 0.7050280018216992 0.0 0.0 0.0 0.0 35 0.7258782935256842 0.0 0.0 0.0 0.0 36 0.7432068468996297 0.0 0.0 0.0 0.0 37 0.7588945903698066 0.0 0.0 0.0 0.0 38 0.7692196868374229 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTAGT 50 0.0 205.74321 44 AGCGTCA 515 0.0 174.78186 44 TATCGAC 15 0.0042949594 171.45267 44 CTATCAT 2195 0.0 167.54715 44 GTACGTA 35 1.9913332E-6 146.95943 44 CGTGCGC 100 0.0 141.44846 44 CGTAGTT 50 7.592098E-8 128.58951 44 CAAACGC 70 4.3783075E-9 110.219574 44 GACGAAT 70 4.3783075E-9 110.219574 44 AACGACA 240 0.0 101.495674 43 CCAGAAT 850 0.0 99.84596 44 TCGTGCG 330 0.0 99.06754 43 ACTTCTA 1435 0.0 96.77817 44 AATCGCA 270 0.0 95.25148 44 AATAACG 55 1.8836341E-5 93.51964 44 TAATAGG 35 5.74797E-7 91.57504 43 CCTATCA 2110 0.0 86.88779 43 AGCGGAT 75 8.505285E-7 85.72633 44 CGACTCG 165 0.0 85.72633 44 GACGATT 30 2.9462142E-5 85.47004 43 >>END_MODULE