Basic Statistics
Measure | Value |
---|---|
Filename | ERR840962.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7024653 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 16921 | 0.2408802256851691 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA | 10808 | 0.15385813363307768 | No Hit |
CTAGGCAGGTGCTGGGGGCTTCCGAGACAATC | 10029 | 0.14276861789472023 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8791 | 0.12514497157368484 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTCGGTA | 35 | 1.8339051E-8 | 163.17178 | 44 |
CTATCAT | 8275 | 0.0 | 157.21675 | 44 |
TAAGCCA | 4260 | 0.0 | 153.09804 | 44 |
AGCGTTA | 110 | 0.0 | 103.836586 | 44 |
ACCACTC | 1040 | 0.0 | 101.040985 | 44 |
TTAAGCC | 3830 | 0.0 | 86.54487 | 43 |
CCTATCA | 8820 | 0.0 | 76.14123 | 43 |
ACATTGG | 1215 | 0.0 | 75.20675 | 44 |
ACTTCTA | 2130 | 0.0 | 72.92936 | 44 |
GACGGAT | 95 | 0.0 | 72.6901 | 43 |
TCCTATA | 65 | 1.2187229E-10 | 70.82625 | 43 |
ATTAAGC | 4795 | 0.0 | 70.2302 | 42 |
TGCACCG | 1435 | 0.0 | 70.17845 | 43 |
GTAATCA | 25 | 0.0023483522 | 69.055595 | 43 |
GTATAGT | 85 | 3.6241054E-6 | 67.188385 | 44 |
AACGACA | 810 | 0.0 | 66.78216 | 43 |
TCCTCGA | 155 | 9.094947E-12 | 66.32143 | 44 |
TAAGAGT | 265 | 0.0 | 64.65298 | 44 |
CGCTTAT | 160 | 1.0913936E-11 | 64.248886 | 44 |
CCCTATC | 11470 | 0.0 | 62.9716 | 42 |