FastQCFastQC Report
Tue 24 May 2016
ERR840962.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840962.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7024653
Sequences flagged as poor quality0
Sequence length24-50
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA169210.2408802256851691No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA108080.15385813363307768No Hit
CTAGGCAGGTGCTGGGGGCTTCCGAGACAATC100290.14276861789472023No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA87910.12514497157368484No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCGGTA351.8339051E-8163.1717844
CTATCAT82750.0157.2167544
TAAGCCA42600.0153.0980444
AGCGTTA1100.0103.83658644
ACCACTC10400.0101.04098544
TTAAGCC38300.086.5448743
CCTATCA88200.076.1412343
ACATTGG12150.075.2067544
ACTTCTA21300.072.9293644
GACGGAT950.072.690143
TCCTATA651.2187229E-1070.8262543
ATTAAGC47950.070.230242
TGCACCG14350.070.1784543
GTAATCA250.002348352269.05559543
GTATAGT853.6241054E-667.18838544
AACGACA8100.066.7821643
TCCTCGA1559.094947E-1266.3214344
TAAGAGT2650.064.6529844
CGCTTAT1601.0913936E-1164.24888644
CCCTATC114700.062.971642