##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR840961.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10437376 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 37.44362012061269 39.0 37.0 39.0 35.0 39.0 2 37.87664619919796 39.0 38.0 39.0 35.0 39.0 3 37.988524701994066 39.0 38.0 39.0 35.0 40.0 4 38.728003666822005 39.0 38.0 41.0 35.0 41.0 5 39.26486475144711 40.0 39.0 41.0 35.0 41.0 6 39.246997233787496 40.0 39.0 41.0 35.0 41.0 7 39.27490817615462 40.0 39.0 41.0 35.0 41.0 8 39.18441723283706 40.0 38.0 41.0 35.0 41.0 9 39.140441045718774 40.0 38.0 41.0 35.0 41.0 10 39.020929398346865 40.0 38.0 41.0 35.0 41.0 11 38.95540622470629 40.0 38.0 41.0 35.0 41.0 12 38.88976309754482 40.0 38.0 41.0 35.0 41.0 13 38.825372871495674 40.0 38.0 41.0 35.0 41.0 14 38.79398730102279 40.0 38.0 41.0 35.0 41.0 15 38.795002786140884 40.0 38.0 41.0 35.0 41.0 16 38.739735351107406 40.0 38.0 41.0 35.0 41.0 17 38.72741683350298 40.0 38.0 41.0 35.0 41.0 18 38.719534392552305 40.0 38.0 41.0 35.0 41.0 19 38.77785278598759 40.0 38.0 41.0 35.0 41.0 20 38.779204083478454 40.0 38.0 41.0 35.0 41.0 21 38.66854245741458 40.0 38.0 41.0 35.0 41.0 22 38.56581568010964 40.0 37.0 41.0 35.0 41.0 23 38.323798242010255 40.0 37.0 41.0 34.0 41.0 24 38.12670272681563 40.0 36.0 41.0 34.0 41.0 25 38.02134582816353 40.0 36.0 41.0 33.0 41.0 26 37.9352636771236 40.0 35.0 41.0 33.0 41.0 27 37.852297376645886 40.0 35.0 41.0 33.0 41.0 28 37.774221703171825 39.0 35.0 41.0 33.0 41.0 29 37.608400177700986 39.0 35.0 41.0 33.0 41.0 30 37.50572754495687 39.0 35.0 41.0 33.0 41.0 31 37.369496306372916 39.0 35.0 41.0 33.0 41.0 32 37.18327789086836 38.0 35.0 41.0 33.0 41.0 33 37.072558585860754 38.0 35.0 41.0 33.0 41.0 34 36.93567085592972 38.0 35.0 41.0 33.0 41.0 35 36.78500204958169 37.0 35.0 40.0 33.0 41.0 36 36.687673909560125 37.0 35.0 40.0 33.0 41.0 37 36.58310555987456 37.0 35.0 40.0 33.0 41.0 38 36.5175961221046 37.0 35.0 40.0 33.0 41.0 39 36.44163286717542 36.0 35.0 40.0 33.0 41.0 40 36.29309664851171 36.0 35.0 40.0 33.0 41.0 41 36.163811305336424 35.0 35.0 40.0 32.0 41.0 42 36.06471192672343 35.0 35.0 40.0 32.0 41.0 43 35.902177568931236 35.0 35.0 39.0 32.0 41.0 44 35.72374282417679 35.0 35.0 39.0 31.0 41.0 45 35.5290364176454 35.0 34.0 39.0 31.0 41.0 46 35.23708440643242 35.0 34.0 39.0 30.0 41.0 47 35.02987460731654 35.0 34.0 38.0 30.0 41.0 48 35.101905193047884 35.0 34.0 38.0 30.0 41.0 49 34.9699846001197 35.0 33.0 38.0 30.0 40.0 50 35.33283066248997 35.0 34.0 39.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 14.0 20 33.0 21 107.0 22 241.0 23 471.0 24 1108.0 25 2364.0 26 4696.0 27 9550.0 28 20112.0 29 39584.0 30 73107.0 31 129561.0 32 220079.0 33 381012.0 34 721058.0 35 646444.0 36 1067827.0 37 1595261.0 38 1823354.0 39 1947522.0 40 1753871.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 43.151755766966716 19.401897565058498 37.44634666797479 2 31.319672684015597 18.609351622476762 27.245765602388953 22.825210091118684 3 22.15001165043781 17.586977799784158 31.400018548723356 28.86299200105467 4 23.492264722474307 18.798470036913493 32.708853259669866 25.00041198094234 5 23.659385270780703 18.935314776434232 29.049724758406708 28.355575194378357 6 23.989382005592212 21.361135212528513 28.889425848029237 25.760056933850038 7 33.16288500098109 17.132476591817714 21.654293186333422 28.050345220867772 8 26.824586945991026 18.137901710161636 25.49705021645287 29.540461127394472 9 30.540118512545682 18.31705593436511 24.590960409972777 26.551865143116434 10 26.863035306958377 17.055733165117363 24.74787724424223 31.33335428368203 11 28.624713721149835 17.807473832503497 27.3673383041868 26.20047414215987 12 30.58967119705183 21.758141126658654 20.86376882465478 26.788418851634738 13 27.963321432513304 17.071072269505287 26.946734504917714 28.0188717930637 14 30.951591664418338 19.608386245738394 21.82605091547914 27.61397117436413 15 25.519766653994257 20.945753032179738 21.826347924995705 31.708132388830297 16 29.484977833509113 18.862097140124106 24.860463012925855 26.792462013440925 17 30.006622354124257 19.039842964361924 21.976146111819673 28.977388569694146 18 31.785163244095067 18.096626968310808 18.90098622489024 31.217223562703882 19 31.900680784135783 18.587420823011456 21.944193636408233 27.567704756444535 20 32.89686986460965 18.511942081994555 22.237782753059772 26.353405300336025 21 33.73794332981776 22.231794657967676 18.192321518358636 25.837940493855925 22 33.88188755487969 21.537079817762624 20.13371943293027 24.447313194427412 23 32.723330078364526 21.644539777047413 20.364917389198204 25.267212755389863 24 33.93254204888279 22.031064129528342 20.343226113536584 23.693167708052293 25 31.831891096333337 24.20406592809541 20.228388423798325 23.735654551772928 26 31.739772349170785 24.34395627469372 19.79510609571311 24.12116528042238 27 30.587726677198773 25.25788515705832 19.88328707218205 24.27110109356086 28 31.2867355512571 23.797061352675065 20.391455608400747 24.524747487667085 29 31.192668189006127 24.98153904039486 20.310891480482727 23.514901290116285 30 31.66223958843567 24.94925820615563 19.109203617741954 24.279298587666744 31 28.580385922013406 24.265160704189277 21.44690753367837 25.707545840118947 32 27.944260786416304 23.33536104786766 23.021816300429755 25.69856186528628 33 27.623750545611593 23.273305051121874 22.803446821568652 26.299497581697878 34 28.931884949637325 22.705305685648543 23.69239823487394 24.670411129840193 35 27.610582595544535 23.207166729963845 21.76298315186699 27.41926752262463 36 28.433018122364555 24.04624033208228 22.44509049468027 25.0756510508729 37 26.467111097552127 26.05359470385944 22.505367781110248 24.97392641747819 38 28.446306104488016 24.53696842563222 20.918890577259493 26.097834892620263 39 28.330745306804445 25.549031342200447 20.20286526882632 25.91735808216879 40 27.636258646482055 24.78646544400816 20.836582711862256 26.740693197647524 41 27.351665823125032 24.87946747415457 21.308446868256862 26.460419834463533 42 26.566560378287967 25.070463915818642 21.685419699554345 26.67755600633905 43 26.53495718503262 25.54087945381653 22.238081666413674 25.686081694737183 44 26.634681070704453 26.13197191672489 20.722421524815303 26.510925487755355 45 28.578148460066917 23.96329130686625 21.459709180912604 25.998851052154233 46 27.38314772871332 24.77409837643695 20.914385504874623 26.928368389975116 47 26.50275047673178 24.292683921455186 21.64355102292438 27.561014578888653 48 25.943991905238605 25.036541154514104 20.620932479733067 28.398534460514224 49 27.454153413130676 25.095018912080068 20.114450638767963 27.336377036021293 50 24.05288075698346 28.41082662386414 22.486780619773732 25.04951199937867 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 159859.0 1 138360.5 2 103698.0 3 85455.5 4 75269.5 5 54413.5 6 31104.0 7 24799.5 8 26127.0 9 25439.0 10 24091.0 11 23433.0 12 23086.0 13 22399.5 14 23032.5 15 24504.0 16 24392.5 17 23576.5 18 23852.0 19 26204.5 20 29005.0 21 32779.5 22 39985.5 23 56364.0 24 77487.5 25 91992.0 26 106764.0 27 120750.0 28 125286.0 29 129487.0 30 134867.5 31 138979.0 32 145552.0 33 150589.5 34 155025.0 35 156927.5 36 157383.0 37 157305.0 38 158139.5 39 171781.5 40 191312.5 41 215670.5 42 245928.5 43 265833.0 44 273101.0 45 272317.0 46 292887.0 47 345876.0 48 406726.0 49 450396.0 50 507439.5 51 578069.0 52 628127.5 53 658635.5 54 664258.0 55 672088.5 56 694844.5 57 718822.0 58 741523.0 59 749888.0 60 747709.5 61 750161.0 62 735096.5 63 714607.5 64 690190.5 65 657419.5 66 631230.5 67 611069.0 68 583174.0 69 546379.5 70 506487.0 71 468459.5 72 418971.5 73 369962.0 74 340882.0 75 313650.0 76 275689.5 77 218891.5 78 173307.0 79 146369.0 80 122345.0 81 93949.5 82 71898.5 83 59372.5 84 47080.5 85 35278.0 86 23697.0 87 15399.0 88 9100.5 89 5200.0 90 3744.0 91 2611.0 92 1914.5 93 1470.0 94 987.5 95 466.5 96 228.0 97 214.0 98 108.5 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 75117.0 25 65613.0 26 61276.0 27 71510.0 28 75002.0 29 85270.0 30 70804.0 31 79326.0 32 86895.0 33 74564.0 34 68084.0 35 62911.0 36 55214.0 37 72632.0 38 65660.0 39 64437.0 40 76091.0 41 77961.0 42 110581.0 43 166101.0 44 475079.0 45 1021803.0 46 1097806.0 47 1448837.0 48 1557348.0 49 2035390.0 50 1236064.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.80288281854476 #Duplication Level Percentage of deduplicated Percentage of total 1 73.41128304571505 13.069324696218867 2 12.216283329006568 4.349701211688917 3 4.159843159486944 2.2217160093561326 4 1.9291678056441826 1.3737899352477008 5 1.1101091356661603 0.9881571429030329 6 0.7524155558015135 0.8037099582470744 7 0.536872913258035 0.669051989422848 8 0.4016787027316103 0.5720831100348748 9 0.31922410921854355 0.5114798468344859 >10 2.9474851943968448 12.033377995679619 >50 1.2701823818892122 16.41717210953731 >100 0.8562428615389476 26.270901482655397 >500 0.053659987381345316 6.477512671563818 >1k 0.033392128370434704 10.927151854678213 >5k 0.0013290399351416795 1.6747369107190035 >10k+ 8.306499594635498E-4 1.6401330752127568 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAA 11521 0.11038214968973044 No Hit CTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTTGGG 11311 0.10837014973878493 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAA 11138 0.1067126450172917 No Hit CTAGGCAGGTGCTGGGGGCTTCCGAGACAATC 10967 0.10507430220009321 No Hit AGAACTGCGTCTCGCGACCCAGGCGCGGG 10518 0.10077245468592873 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.050089217826396214 0.0 0.0 0.0 0.0 2 0.08501178840352211 0.0 0.0 0.0 0.0 3 0.10747912118908047 0.0 0.0 0.0 0.0 4 0.13140275870103751 0.0 0.0 0.0 0.0 5 0.14698138689264428 0.0 0.0 0.0 0.0 6 0.19240468102327635 0.0 0.0 0.0 0.0 7 0.20952584251060802 0.0 0.0 0.0 0.0 8 0.23015363248387335 0.0 0.0 0.0 0.0 9 0.24890355583625617 0.0 0.0 0.0 0.0 10 0.264271403080621 0.0 0.0 0.0 0.0 11 0.28096142172132155 0.0 0.0 0.0 0.0 12 0.3022311354884599 0.0 0.0 0.0 0.0 13 0.3218529254862525 0.0 0.0 0.0 0.0 14 0.33655010608030217 0.0 0.0 0.0 0.0 15 0.354207800887886 0.0 0.0 0.0 0.0 16 0.3669983720046111 0.0 0.0 0.0 0.0 17 0.380929076426872 0.0 0.0 0.0 0.0 18 0.3956358379730691 0.0 0.0 0.0 0.0 19 0.4119426185278752 0.0 0.0 0.0 0.0 20 0.42615117056240953 0.0 0.0 0.0 0.0 21 0.44346395109268844 0.0 0.0 0.0 0.0 22 0.4620414173064188 0.0 0.0 0.0 0.0 23 0.4823147120502318 0.0 0.0 0.0 0.0 24 0.5048203686443796 0.0 0.0 0.0 0.0 25 0.5296541966103357 0.0 0.0 0.0 0.0 26 0.5613958910745382 0.0 0.0 0.0 0.0 27 0.5861434904711682 0.0 0.0 0.0 0.0 28 0.6106611470162615 0.0 0.0 0.0 0.0 29 0.6364530701969537 0.0 0.0 0.0 0.0 30 0.660568326751858 0.0 0.0 0.0 0.0 31 0.6860440785116872 0.0 0.0 0.0 0.0 32 0.7118551635966741 0.0 0.0 0.0 0.0 33 0.7364303058546516 0.0 0.0 0.0 0.0 34 0.7584185910328419 0.0 0.0 0.0 0.0 35 0.7761912572661941 0.0 0.0 0.0 0.0 36 0.7923255806823477 0.0 0.0 0.0 0.0 37 0.8034394851732849 0.0 0.0 0.0 0.0 38 0.8118228183022246 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCAT 2375 0.0 238.82536 44 CCCATAC 770 0.0 124.92669 44 ACGACAC 535 0.0 117.80067 44 ACTTCTA 1540 0.0 99.07979 44 AATCGCA 915 0.0 97.87924 44 TATACCG 30 2.5782356E-8 85.42146 42 TATCCAA 455 0.0 76.01769 43 CCTATCA 2870 0.0 75.15807 43 ACCACTC 615 0.0 72.81261 44 CCTATAT 205 3.6379788E-12 72.81261 44 AACGACA 890 0.0 72.77977 43 TGCACCG 1975 0.0 71.96225 43 CTAATCG 580 0.0 69.95723 42 AAACTAC 1950 0.0 69.65985 43 GTGTTAG 2220 0.0 69.402725 43 TTAGCCC 550 0.0 69.35584 44 TGTGTTA 3155 0.0 67.68737 42 GTCAAGC 470 0.0 67.04612 44 CCCTATC 3445 0.0 66.45269 42 CGGATAC 180 7.0958777E-9 64.49759 44 >>END_MODULE