Basic Statistics
Measure | Value |
---|---|
Filename | ERR840956.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7190994 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 16657 | 0.231636961454842 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAA | 11976 | 0.16654164917951536 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAA | 11783 | 0.16385773649651217 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAA | 10984 | 0.15274661611454549 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA | 9634 | 0.13397313361685464 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9619 | 0.1337645393668803 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAA | 9303 | 0.12937015383408745 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC | 8387 | 0.11663199830232093 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAA | 7260 | 0.10095961698758198 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATCAT | 6710 | 0.0 | 178.13292 | 44 |
TAAGCCA | 4245 | 0.0 | 146.66827 | 44 |
ACCACTC | 600 | 0.0 | 146.12578 | 44 |
ACATTGG | 1295 | 0.0 | 117.40912 | 44 |
GTTCGAA | 120 | 0.0 | 110.98161 | 44 |
ACGAACA | 170 | 0.0 | 110.9816 | 44 |
TTAAGCC | 3120 | 0.0 | 105.068924 | 43 |
AATCGCA | 860 | 0.0 | 103.2387 | 44 |
ACTTCTA | 2645 | 0.0 | 101.12123 | 44 |
GTGTTAG | 2420 | 0.0 | 92.46878 | 43 |
CGGTCTA | 185 | 0.0 | 89.98509 | 44 |
TAGATTA | 35 | 1.0300628E-6 | 83.03319 | 43 |
CCTATCA | 7540 | 0.0 | 83.02217 | 43 |
GGATATC | 55 | 3.9147766E-5 | 80.7139 | 44 |
AAATTCC | 140 | 0.0 | 79.272575 | 44 |
TATTCGT | 15 | 0.0014148144 | 78.464096 | 42 |
AGGTACT | 310 | 0.0 | 75.18108 | 44 |
GATTCAA | 45 | 0.0017859846 | 73.98774 | 44 |
TGCACCG | 1195 | 0.0 | 72.95803 | 43 |
TAACGAA | 60 | 0.0 | 71.92542 | 42 |