Basic Statistics
Measure | Value |
---|---|
Filename | ERR840955.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12445200 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 42147 | 0.33866068845820074 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 27282 | 0.2192170475363996 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 14883 | 0.11958827499758942 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA | 12846 | 0.10322051875421849 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATCAT | 17225 | 0.0 | 228.89998 | 44 |
TAAGCCA | 6055 | 0.0 | 172.62987 | 44 |
ACATTGG | 2290 | 0.0 | 153.85287 | 44 |
AATCACG | 60 | 6.148184E-10 | 146.19212 | 44 |
ACTTCTA | 5385 | 0.0 | 144.97047 | 44 |
AATCGCA | 1960 | 0.0 | 132.76633 | 44 |
ACCACTC | 2590 | 0.0 | 120.79196 | 44 |
CTCGATA | 95 | 1.2187229E-10 | 107.72053 | 44 |
CAGGCAC | 6870 | 0.0 | 98.09982 | 44 |
TTACATG | 360 | 0.0 | 97.461426 | 44 |
ATAGGTC | 140 | 0.0 | 93.98067 | 44 |
TTAAGCC | 4940 | 0.0 | 93.8575 | 43 |
TAATTCC | 3570 | 0.0 | 93.77591 | 44 |
CCTATCA | 18980 | 0.0 | 90.38932 | 43 |
AACGACA | 1020 | 0.0 | 81.54173 | 43 |
CTTTACA | 2445 | 0.0 | 78.327896 | 44 |
ATCATAA | 2605 | 0.0 | 74.639366 | 44 |
ATTAAGC | 6010 | 0.0 | 73.971535 | 42 |
GATATAC | 80 | 6.399584E-5 | 73.09607 | 44 |
CTAATTC | 2010 | 0.0 | 71.64192 | 43 |