FastQCFastQC Report
Tue 24 May 2016
ERR840954.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840954.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1696724
Sequences flagged as poor quality0
Sequence length24-50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT145300.8563561309912513No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC82830.48817603805922477No Hit
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAA66050.38927957640724126No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC65440.3856844130217996No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA50880.2998719886086364No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA47500.2799512472270092No Hit
CAGAGTGTTGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAA43990.25926432348455025No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA42850.252545493551102No Hit
AATTCGTGGAGAAAGAAATGGCTCC42020.2476537138627143No Hit
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAA40600.23928464499824367No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGC39010.2299136453542238No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCG37120.2187745325698228No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG34930.2058673066450407No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGT34630.20409919350465955No Hit
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGC34410.20280257720171344No Hit
ATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGG32240.19001322548629004No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA31980.18848086076462642No Hit
AATTCGTGGAGAAAGAAATGGCTC31160.18364801818091805No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA30750.18123159688906387No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA29240.17233209408247893No Hit
CAGAGTGTTGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTC25840.15229347849149302No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA24290.14315822726619062No Hit
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAA24150.14233310780067943No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCT22960.13531959234383437No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACG21650.12759883163083685No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA21520.126832649270005No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20600.12141043563950295No Hit
CAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGG20150.11875826592893128No Hit
ATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGG19890.11722590120726765No Hit
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCT19860.11704908989322955No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGC19820.11681334147451207No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTA19110.11262880704227676No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA19020.11209837310016244No Hit
ATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAAAAAAAAAAA19020.11209837310016244No Hit
CAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCT18930.1115679391580481No Hit
AACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTT18770.11062494548317817No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTG18740.11044813416914007No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18590.10956407759894951No Hit
CAGAGTGTGGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAA18520.10915151786619391No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC18110.10673509657433973No Hit
TGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGAC17870.10532060606203485No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17180.10125394583915827No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG17170.10119500873447891No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCCTT201.3282806E-6159.4169244
CACGAGT303.3651304E-10159.4169244
ATGTCGC100.005339745159.4169244
TCGTAGG355.456968E-12159.4169244
GCTAGAC252.1051164E-8159.4169244
GGACTCG450.0141.7039344
GTCGAAC306.2522304E-8132.8474344
CGCGTCC254.0324812E-6127.5335444
TGAACGT202.650322E-4119.5626944
GACGATC750.0116.9057444
TAACGAA251.8170795E-7111.0993943
CTATCAT24750.0107.244144
TAGGCGT309.981861E-6106.2779544
ACCCGAT309.981861E-6106.2779544
AACGCTT600.0101.8411143
CACCGTC551.9645086E-10101.4471344
GTGCACC1500.0100.9640544
TACGAGA455.456968E-1298.75500543
ACGCCAA657.2759576E-1298.1027244
TACGTCG750.096.2861343