Basic Statistics
Measure | Value |
---|---|
Filename | ERR840949.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4467142 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 20896 | 0.46777111629762386 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 17038 | 0.38140717263968776 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCG | 13368 | 0.2992517363450725 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 12082 | 0.2704637551257605 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 10448 | 0.23388555814881193 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGC | 8751 | 0.19589706349160155 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7186 | 0.1608634782597016 | No Hit |
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAA | 6531 | 0.1462008595204719 | No Hit |
TCAGAACTGCGTCTCGCGACCCAGGCGCGGG | 6115 | 0.13688841769525123 | No Hit |
AGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCA | 6110 | 0.13677648930792888 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA | 6094 | 0.1364183184684973 | No Hit |
CTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTTGGG | 5896 | 0.1319859543305317 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 5250 | 0.11752480668848225 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4810 | 0.10767510860411422 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC | 4560 | 0.10207868923799601 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATCAT | 4835 | 0.0 | 220.7263 | 44 |
TCGTTAC | 15 | 0.0029866376 | 193.59848 | 44 |
TAATAGG | 70 | 0.0 | 186.68427 | 44 |
GGTTAAT | 115 | 0.0 | 164.13785 | 44 |
CGTTAGC | 40 | 2.115452E-6 | 145.19887 | 44 |
ACGACAC | 170 | 0.0 | 145.19887 | 44 |
TTACGAG | 210 | 0.0 | 145.19885 | 44 |
ACATTGG | 415 | 0.0 | 136.45195 | 44 |
ACTTCTA | 1095 | 0.0 | 124.64561 | 44 |
ACACTAC | 225 | 0.0 | 122.61237 | 44 |
TAACCGA | 75 | 3.0431693E-9 | 116.15909 | 44 |
ATACGTG | 55 | 0.0 | 114.60244 | 43 |
CGTATTT | 50 | 0.0 | 113.45641 | 43 |
GATACTA | 45 | 1.8189894E-12 | 112.055725 | 43 |
TGGTACG | 45 | 1.8189894E-12 | 112.055725 | 43 |
ATTAACT | 145 | 0.0 | 110.15086 | 44 |
TATTCCC | 120 | 0.0 | 108.89915 | 44 |
TAGAGTA | 70 | 8.352072E-8 | 103.71348 | 44 |
CATAGAA | 330 | 0.0 | 101.19921 | 44 |
GCAATTC | 25 | 1.296152E-5 | 100.85014 | 43 |