##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR840938.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7825767 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 37.53881568413678 39.0 38.0 39.0 35.0 39.0 2 37.90311569460221 39.0 38.0 39.0 35.0 39.0 3 38.048292518803585 39.0 38.0 39.0 35.0 39.0 4 38.43858269738928 39.0 38.0 40.0 35.0 41.0 5 39.245635986862375 40.0 39.0 41.0 35.0 41.0 6 39.31279042680417 41.0 39.0 41.0 35.0 41.0 7 39.14979528524169 40.0 38.0 41.0 35.0 41.0 8 39.2019693405132 40.0 39.0 41.0 35.0 41.0 9 39.15563113494179 40.0 38.0 41.0 35.0 41.0 10 38.836043674696676 40.0 38.0 41.0 35.0 41.0 11 38.84004903289352 40.0 38.0 41.0 35.0 41.0 12 38.90188092745414 40.0 38.0 41.0 35.0 41.0 13 38.79295460751643 40.0 38.0 41.0 35.0 41.0 14 38.801820447759304 40.0 38.0 41.0 35.0 41.0 15 38.88283205978404 40.0 38.0 41.0 35.0 41.0 16 38.79486240773588 40.0 38.0 41.0 35.0 41.0 17 38.77181482658505 40.0 38.0 41.0 35.0 41.0 18 38.82899848666591 40.0 38.0 41.0 35.0 41.0 19 38.88142235770628 40.0 38.0 41.0 35.0 41.0 20 38.89957380535352 40.0 38.0 41.0 35.0 41.0 21 38.81830931076788 40.0 38.0 41.0 35.0 41.0 22 38.711299480293754 40.0 38.0 41.0 35.0 41.0 23 38.39942027407665 40.0 37.0 41.0 34.0 41.0 24 38.3705161423794 40.0 37.0 41.0 34.0 41.0 25 38.368647262943654 40.0 37.0 41.0 34.0 41.0 26 38.352083784569196 40.0 37.0 41.0 34.0 41.0 27 38.3029524983723 40.0 37.0 41.0 34.0 41.0 28 38.11756682267039 40.0 36.0 41.0 34.0 41.0 29 38.08397390268005 40.0 36.0 41.0 34.0 41.0 30 38.01799021693374 40.0 35.0 41.0 33.0 41.0 31 37.92487382158635 40.0 35.0 41.0 33.0 41.0 32 37.87621248563984 40.0 35.0 41.0 33.0 41.0 33 37.77647065003382 39.0 35.0 41.0 33.0 41.0 34 37.65978156943295 39.0 35.0 41.0 33.0 41.0 35 37.575625622477254 39.0 35.0 41.0 33.0 41.0 36 37.47446880673324 39.0 35.0 41.0 33.0 41.0 37 37.41352670489085 39.0 35.0 41.0 33.0 41.0 38 37.351912582249525 39.0 35.0 41.0 33.0 41.0 39 37.255841200761616 39.0 35.0 41.0 33.0 41.0 40 37.216800589477614 38.0 35.0 41.0 33.0 41.0 41 37.12394720194957 38.0 35.0 41.0 33.0 41.0 42 36.99249778151391 38.0 35.0 40.0 33.0 41.0 43 36.90692994818632 37.0 35.0 40.0 33.0 41.0 44 36.78415597742432 37.0 35.0 40.0 33.0 41.0 45 36.67931575005252 37.0 35.0 40.0 32.0 41.0 46 36.41538847761711 37.0 35.0 40.0 31.0 41.0 47 36.282021904419196 37.0 35.0 40.0 31.0 41.0 48 36.17149572452145 37.0 35.0 40.0 31.0 41.0 49 36.465238587162155 37.0 35.0 40.0 32.0 41.0 50 36.28075807713566 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 8.0 20 18.0 21 59.0 22 147.0 23 339.0 24 719.0 25 1718.0 26 3147.0 27 6534.0 28 13320.0 29 26392.0 30 49033.0 31 87284.0 32 143287.0 33 244328.0 34 491923.0 35 411121.0 36 622584.0 37 982552.0 38 1196303.0 39 1656094.0 40 1888856.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 49.71662202567493 15.524471914382321 34.75890605994275 2 27.197168021997076 23.832207117845446 30.32935940975498 18.641265450402496 3 29.706570614739743 15.985883556206057 25.023106361331738 29.28443946772246 4 21.53542266208539 18.237202819864173 31.24418347747895 28.983191040571487 5 20.67137955934543 25.65435439107758 26.070748081306277 27.60351796827071 6 26.08682318295446 24.04453135392352 24.1043849120476 25.76426055107442 7 28.322846821276432 23.536836708785223 24.846075790398565 23.294240679539783 8 30.32216522674391 21.871287504470807 24.286245680455348 23.520301588329936 9 32.2828164958144 22.54801350461878 23.392569699557882 21.776600300008933 10 28.89320625058221 19.464264652908785 27.00105944886936 24.64146964763965 11 28.30553222450911 24.794822028307255 24.345179200965223 22.55446654621841 12 27.992783327180582 21.126823734977034 26.490694138989827 24.38969879885256 13 25.12653392312856 20.72011599629787 24.71195475152787 29.4413953290457 14 22.136756691069387 27.23899139854279 22.88033875784955 27.743913152538273 15 22.974936514210047 27.84421003078676 23.41615844172207 25.764695013281123 16 24.140534723305716 27.009620910001537 19.97477052409048 28.875073842602266 17 30.765240007784538 26.859488660983644 18.914542178421616 23.4607291528102 18 25.03533519462054 22.018927984950228 20.231256565650373 32.71448025477886 19 26.81119946453811 26.256467896373607 20.997111209674397 25.935221429413886 20 31.049442182472337 21.328363085688597 22.26804094729628 25.35415378454278 21 26.10669343976124 28.470666197958614 20.36016405804057 25.062476304239574 22 31.25669343337209 23.013731433609 22.85855175601318 22.87102337700573 23 27.799409310295083 22.856596676082997 26.852716161879087 22.49127785174284 24 31.055946337272754 23.655547117617992 22.40460264150466 22.88390390360459 25 26.68062339480139 25.089873098142597 20.85055876908198 27.378944737974038 26 27.87509377295804 29.248286985749615 21.16292959271419 21.713689648578157 27 29.38880371954221 24.78958104087466 21.919432526582778 23.90218271300035 28 26.776037817174224 22.875230422438197 25.568963284881637 24.779768475505943 29 30.70638492167691 25.57064735870968 20.33172951818948 23.391238201423928 30 26.75163921769812 24.97657788696283 21.461497586066113 26.810285309272935 31 25.132276749106243 25.290820184932354 24.947719063104355 24.62918400285705 32 25.1520690330389 25.334863301938682 21.985929546148668 27.52713811887375 33 24.301158891918195 22.762362910071055 26.350184106525067 26.586294091485684 34 24.271218134811804 24.968167681026745 23.725060391269825 27.035553792891626 35 25.005181767111534 24.134986022532875 21.12131939320859 29.738512817147 36 24.237455848229867 27.914085429970736 24.327666503487137 23.520792218312256 37 25.01399757504079 26.81954684815982 26.199185354923337 21.967270221876046 38 29.52340485015637 25.225419998158365 21.27726257609225 23.973912575593012 39 28.566226987929333 24.861706289316782 22.18089830948137 24.39116841327251 40 28.94555871993689 25.60843955298135 21.977157461650528 23.46884426543123 41 28.6007837343285 25.52525625621801 20.9856400284737 24.888319980979794 42 24.416364214963888 29.19640331506837 22.747452447976787 23.63978002199096 43 28.602801830231765 23.783305935820152 22.158551911256 25.455340322692077 44 24.451205746536687 26.062640181778203 21.94646338781793 27.539690683867185 45 24.994227844876317 26.99166911128409 23.550515390678445 24.463587653161152 46 24.538324681092945 25.466150470898498 22.69645959223221 27.299065255776345 47 26.36752183040423 24.38093197883934 25.622618332685455 23.62892785807098 48 27.19423620059167 25.54606513070352 21.620303801577005 25.639394867127802 49 25.042848946437175 26.0718068877631 21.300428161399278 27.584916004400444 50 21.26386865068826 34.1156843462802 23.36752492588631 21.25292207714523 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 79498.0 1 67094.5 2 62425.5 3 68315.5 4 60744.5 5 47394.5 6 36780.5 7 32657.0 8 32034.0 9 32103.0 10 30534.5 11 29832.5 12 30418.5 13 30501.0 14 30611.0 15 32018.0 16 34091.5 17 35105.5 18 36851.5 19 40700.5 20 44939.0 21 50016.5 22 54632.5 23 62134.0 24 71202.5 25 77461.0 26 84045.0 27 91502.5 28 96509.5 29 103254.5 30 114744.5 31 128964.0 32 147181.0 33 163667.5 34 174565.0 35 174697.5 36 179240.0 37 196729.0 38 208184.0 39 214953.5 40 223467.5 41 231614.0 42 237295.5 43 246646.0 44 260106.0 45 266594.0 46 274390.0 47 292736.5 48 328688.0 49 374554.5 50 429722.5 51 483530.0 52 508636.0 53 536687.0 54 578014.5 55 638494.5 56 667754.0 57 585652.0 58 490275.0 59 452418.0 60 438534.5 61 433027.5 62 425062.5 63 407786.0 64 378995.0 65 363853.0 66 360225.0 67 351602.5 68 345271.5 69 331521.5 70 297587.0 71 262947.0 72 242302.5 73 228792.5 74 203928.0 75 169632.5 76 138252.5 77 104421.0 78 83062.0 79 72302.0 80 57476.0 81 39639.0 82 27114.0 83 22142.0 84 18248.0 85 14898.5 86 13407.0 87 11579.0 88 7615.5 89 4652.5 90 2532.0 91 1200.5 92 1179.0 93 1117.5 94 659.0 95 168.5 96 54.0 97 52.0 98 140.0 99 228.0 100 228.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 58426.0 25 38567.0 26 32343.0 27 42554.0 28 40988.0 29 42052.0 30 44193.0 31 45009.0 32 57129.0 33 46784.0 34 49141.0 35 40085.0 36 37240.0 37 40272.0 38 48330.0 39 43130.0 40 53354.0 41 52378.0 42 80681.0 43 111611.0 44 290144.0 45 576251.0 46 969627.0 47 807817.0 48 1434303.0 49 1071602.0 50 1671756.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.320213008694253 #Duplication Level Percentage of deduplicated Percentage of total 1 75.67840984385047 14.621229983424552 2 11.170723766597094 4.316415252638784 3 3.66370748838111 2.123508272312138 4 1.7157874165262044 1.325975134596939 5 0.9781543485335167 0.944907518452405 6 0.6508443188292236 0.7544670525167468 7 0.44953855293943956 0.6079626418887106 8 0.3631396868668054 0.5612748881741769 9 0.2605160125707306 0.4529902369537966 >10 2.9002165255328696 13.516528093984654 >50 1.3001649013225967 18.26977764085968 >100 0.8117340041992372 26.129762991600774 >500 0.033758724224639616 4.340667516845078 >1k 0.021562023859608526 8.46723667369105 >5k 0.0010889911040206327 1.4367481139562632 >10k+ 6.533946624123797E-4 2.1305479881043086 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAGCAGTGGTATCAACGCAGAGTGCAGTGCTCTCCATGGGGAGCAC 28683 0.36651998455870205 No Hit ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA 11469 0.14655432496265222 No Hit AAGCAGTGGTATCAACGCAGAGTGCAG 10480 0.13391658606753817 No Hit TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8715 0.1113628862193316 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.05250603551064068 0.0 0.0 0.0 0.0 2 0.09696174189699233 0.0 0.0 0.0 0.0 3 0.10804052816803772 0.0 0.0 0.0 0.0 4 0.13046644501427143 0.0 0.0 0.0 0.0 5 0.19466462520542716 0.0 0.0 0.0 0.0 6 0.2310572241672925 0.0 0.0 0.0 0.0 7 0.24911296234605504 0.0 0.0 0.0 0.0 8 0.26493249799029284 0.0 0.0 0.0 0.0 9 0.2830010144692527 0.0 0.0 0.0 0.0 10 0.2966226824795576 0.0 0.0 0.0 0.0 11 0.31497232156285765 0.0 0.0 0.0 0.0 12 0.3291690130820404 0.0 0.0 0.0 0.0 13 0.34478409592312165 0.0 0.0 0.0 0.0 14 0.3588530044403315 0.0 0.0 0.0 0.0 15 0.38000109126683684 0.0 0.0 0.0 0.0 16 0.39824850394855865 0.0 0.0 0.0 0.0 17 0.42634798608238655 0.0 0.0 0.0 0.0 18 0.4519045864769549 0.0 0.0 0.0 0.0 19 0.5068001641244877 0.0 0.0 0.0 0.0 20 0.5232458364783925 0.0 0.0 0.0 0.0 21 0.5541565446556229 0.0 0.0 0.0 0.0 22 0.5692093822880236 0.0 0.0 0.0 0.0 23 0.5863323045523845 0.0 0.0 0.0 0.0 24 0.6010656846798531 0.0 0.0 0.0 0.0 25 0.6195175501647314 0.0 0.0 0.0 0.0 26 0.67970334409394 0.0 0.0 0.0 0.0 27 0.6950500826308782 0.0 0.0 0.0 0.0 28 0.7147925564356823 0.0 0.0 0.0 0.0 29 0.7319410353004376 0.0 0.0 0.0 0.0 30 0.7486678302586827 0.0 0.0 0.0 0.0 31 0.7634012103861513 0.0 0.0 0.0 0.0 32 0.7781984820146064 0.0 0.0 0.0 0.0 33 0.7914751359195846 0.0 0.0 0.0 0.0 34 0.8055568227369918 0.0 0.0 0.0 0.0 35 0.8175684249224389 0.0 0.0 0.0 0.0 36 0.8290050035990083 0.0 0.0 0.0 0.0 37 0.8386781768483523 0.0 0.0 0.0 0.0 38 0.844773426042457 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATCAT 4480 0.0 146.76558 44 CACTGCA 18785 0.0 99.62833 44 GAACGTA 35 0.0012990433 80.16783 44 CGAAACG 25 1.8596565E-6 75.18121 42 CCTATCA 5605 0.0 74.262085 43 CGGATTA 110 1.7462298E-10 68.02119 44 AGACGAT 300 0.0 66.613464 43 GCACTGC 19245 0.0 64.26222 43 TTAAGCC 1725 0.0 63.220726 43 TTAGCGA 25 5.315269E-6 62.99395 41 GACGATC 520 0.0 62.952305 44 TAAGCCA 2850 0.0 62.68093 44 CTCGGTA 190 0.0 59.07103 44 CGAAATA 130 7.712515E-10 57.556396 44 CCCTATC 7675 0.0 56.12878 42 CCCATAC 640 0.0 55.532925 44 GACCGTA 155 6.002665E-11 54.30724 44 AACGACA 490 0.0 52.436253 43 CTAATCG 290 0.0 50.552887 42 CTATTCG 75 1.0506356E-4 49.882206 44 >>END_MODULE