Basic Statistics
Measure | Value |
---|---|
Filename | ERR840935.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5145044 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 56 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTTGGG | 7809 | 0.15177712765916093 | No Hit |
CTTTTCCAAGCGGCTGCCGAAGATGGCGGAGG | 7559 | 0.1469180827219359 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTATCAT | 1595 | 0.0 | 173.18532 | 44 |
CGCATTA | 15 | 0.004551006 | 168.17691 | 44 |
CAAACGA | 100 | 0.0 | 126.13268 | 44 |
ACGACAC | 390 | 0.0 | 119.664345 | 44 |
CCACTTA | 465 | 0.0 | 113.92629 | 44 |
TCTATGA | 90 | 2.564775E-10 | 98.103195 | 44 |
CCAGAAT | 765 | 0.0 | 95.63001 | 44 |
ACCCATA | 40 | 6.729264E-4 | 94.59952 | 44 |
CGAATCA | 45 | 3.4742698E-10 | 94.4248 | 43 |
CAAATAG | 130 | 0.0 | 87.322624 | 44 |
CGAATAA | 20 | 3.6493304E-5 | 81.867874 | 42 |
CGTCACA | 35 | 1.0750227E-9 | 81.867874 | 42 |
GACAATA | 110 | 1.2569217E-9 | 80.26625 | 44 |
ATCACGT | 110 | 1.2569217E-9 | 80.26625 | 44 |
AACGACA | 575 | 0.0 | 80.23176 | 43 |
ACTTCTA | 915 | 0.0 | 79.95296 | 44 |
CCTATCA | 1705 | 0.0 | 77.9687 | 43 |
CGCTACC | 775 | 0.0 | 69.9833 | 44 |
CCCTATC | 2075 | 0.0 | 69.83428 | 42 |
TGTGTTA | 1525 | 0.0 | 68.98376 | 42 |