Basic Statistics
Measure | Value |
---|---|
Filename | ERR840917.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8419608 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA | 64250 | 0.7630996597466295 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 22557 | 0.26791033501797235 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCT | 22190 | 0.2635514622533496 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 18813 | 0.2234427065963166 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTG | 17056 | 0.2025747516986539 | No Hit |
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTA | 15465 | 0.18367838502695136 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGT | 13372 | 0.1588197455273452 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 13319 | 0.15819026253953866 | No Hit |
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTG | 13244 | 0.15729948472660485 | No Hit |
TTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12542 | 0.1489618043975444 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTC | 12473 | 0.1481422888096453 | No Hit |
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGA | 10812 | 0.12841452951253787 | No Hit |
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCG | 10324 | 0.12261853520971523 | No Hit |
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGG | 10061 | 0.119494874345694 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9471 | 0.11248742221728136 | No Hit |
ATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGC | 8529 | 0.10129925288683272 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAAGCCA | 20290 | 0.0 | 193.3186 | 44 |
CTATCAT | 8270 | 0.0 | 160.63231 | 44 |
TTAAGCC | 20210 | 0.0 | 110.73226 | 43 |
TTACCGT | 90 | 9.094947E-12 | 94.69334 | 44 |
ACTTCTA | 2560 | 0.0 | 91.965355 | 44 |
CGACGGG | 7710 | 0.0 | 91.33117 | 44 |
CGGATAC | 35 | 7.746468E-4 | 91.31143 | 44 |
ACGATAG | 20 | 8.007695E-4 | 90.55431 | 43 |
AACGACA | 555 | 0.0 | 85.93142 | 43 |
GCGATAA | 105 | 3.6379788E-11 | 81.16572 | 44 |
ATACGCG | 35 | 1.5988917E-9 | 77.875534 | 42 |
ATTAAGC | 28520 | 0.0 | 74.91287 | 42 |
AATCGCA | 1170 | 0.0 | 69.19898 | 44 |
ACGACAC | 480 | 0.0 | 66.58125 | 44 |
CGTAATG | 115 | 8.276402E-10 | 64.844345 | 44 |
ACATTGG | 1340 | 0.0 | 64.395004 | 44 |
GCATACA | 390 | 0.0 | 61.917473 | 43 |
GTGTTAG | 1550 | 0.0 | 61.148502 | 43 |
ACGTTAT | 125 | 1.3145836E-8 | 59.656803 | 44 |
ACCTTAG | 2675 | 0.0 | 59.53475 | 42 |