Basic Statistics
Measure | Value |
---|---|
Filename | ERR840916.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3952704 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATC | 25511 | 0.6454062839008435 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGC | 16851 | 0.42631575751687956 | No Hit |
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTA | 14712 | 0.3722009034827804 | No Hit |
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAA | 14513 | 0.36716637522060847 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGC | 8404 | 0.21261394731302927 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 6934 | 0.17542421592914623 | No Hit |
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACG | 6627 | 0.1676573808714237 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTA | 6570 | 0.1662153300626609 | No Hit |
AATTCGTGGAGAAAGAAATGGCTCC | 6291 | 0.1591568708408219 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCT | 5864 | 0.1483541393435987 | No Hit |
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTG | 5457 | 0.13805739058629232 | No Hit |
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCCCCG | 4880 | 0.12345978853969333 | No Hit |
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTA | 4817 | 0.12186594290895549 | No Hit |
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCC | 4806 | 0.12158765240200126 | No Hit |
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTC | 4293 | 0.10860919512313595 | No Hit |
CCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGT | 3961 | 0.10020988164051747 | No Hit |
ATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGG | 3956 | 0.10008338595553828 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTAGA | 20 | 2.5670852E-7 | 221.74489 | 44 |
CTATCAT | 5730 | 0.0 | 182.46544 | 44 |
TAAGCCA | 5270 | 0.0 | 175.88112 | 44 |
ATTAGTC | 235 | 0.0 | 165.12915 | 44 |
GCATTAC | 195 | 0.0 | 164.8872 | 44 |
CCACGAC | 85 | 0.0 | 130.43816 | 44 |
TATAGAG | 45 | 9.814357E-8 | 123.19159 | 44 |
CGTTAGC | 20 | 4.862508E-6 | 122.84181 | 43 |
ACATTGG | 790 | 0.0 | 112.27588 | 44 |
AATACGG | 30 | 3.579496E-4 | 110.87243 | 44 |
TTTTACA | 225 | 0.0 | 103.480934 | 44 |
TTAAGCC | 5080 | 0.0 | 101.68304 | 43 |
CGACGGG | 2595 | 0.0 | 99.97745 | 44 |
ACTTCTA | 1810 | 0.0 | 98.62133 | 44 |
TTAACGG | 25 | 1.4738982E-5 | 98.273445 | 43 |
ATTCGGT | 55 | 3.9327126E-5 | 80.63449 | 44 |
GATCGTT | 25 | 1.3487679E-6 | 79.352615 | 42 |
TTATCCC | 530 | 0.0 | 77.40151 | 44 |
CAACACG | 130 | 1.8189894E-12 | 76.75784 | 44 |
TAATATG | 235 | 0.0 | 75.48761 | 44 |