##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR840897.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2365196 Sequences flagged as poor quality 0 Sequence length 24-50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 35.7671080959041 38.0 35.0 39.0 30.0 39.0 2 36.63670156722741 39.0 35.0 39.0 32.0 39.0 3 36.81850891004382 39.0 35.0 39.0 33.0 39.0 4 36.92007300874854 38.0 35.0 39.0 33.0 40.0 5 37.78816301059194 39.0 36.0 40.0 33.0 41.0 6 37.7083759654591 39.0 36.0 40.0 33.0 41.0 7 37.22191480114122 38.0 35.0 40.0 32.0 41.0 8 37.51660242956609 39.0 36.0 40.0 33.0 41.0 9 37.37513592953819 39.0 35.0 40.0 33.0 41.0 10 36.46314554903695 38.0 34.0 40.0 30.0 41.0 11 36.93389723304115 38.0 35.0 40.0 32.0 41.0 12 37.320244918391545 39.0 35.0 40.0 33.0 41.0 13 37.6114588389292 39.0 35.0 40.0 33.0 41.0 14 37.63194001681045 39.0 35.0 41.0 33.0 41.0 15 37.60339439099339 39.0 35.0 41.0 33.0 41.0 16 37.65079511380875 39.0 35.0 41.0 33.0 41.0 17 37.56779903230007 39.0 35.0 41.0 33.0 41.0 18 37.52808562165673 39.0 35.0 41.0 33.0 41.0 19 37.451299173514585 39.0 35.0 41.0 33.0 41.0 20 37.41519772568531 39.0 35.0 41.0 33.0 41.0 21 37.16622216509752 39.0 35.0 40.0 32.0 41.0 22 37.02606676148615 38.0 35.0 40.0 32.0 41.0 23 36.59022212112654 38.0 35.0 40.0 31.0 41.0 24 36.55359513545601 38.0 35.0 40.0 31.0 41.0 25 36.52791479541293 38.0 35.0 40.0 31.0 41.0 26 36.51355980389515 38.0 35.0 40.0 31.0 41.0 27 36.355995803121 38.0 35.0 40.0 31.0 41.0 28 36.179734759256455 37.0 34.0 40.0 30.0 41.0 29 36.22225422409451 37.0 34.0 40.0 31.0 41.0 30 36.23165937272572 37.0 34.0 40.0 31.0 41.0 31 36.16017131306738 37.0 34.0 40.0 31.0 41.0 32 36.06908572885127 37.0 34.0 40.0 31.0 41.0 33 35.947929941910786 37.0 34.0 40.0 31.0 41.0 34 35.965745793426315 37.0 34.0 40.0 31.0 41.0 35 35.85463529490447 36.0 34.0 40.0 31.0 41.0 36 35.76508562014741 36.0 34.0 40.0 30.0 41.0 37 35.616141678950555 36.0 34.0 39.0 30.0 41.0 38 35.52791152332731 36.0 34.0 39.0 30.0 41.0 39 35.26733159758501 35.0 34.0 39.0 30.0 41.0 40 35.08836611803325 35.0 33.0 39.0 29.0 41.0 41 34.8815545792855 35.0 33.0 38.0 29.0 41.0 42 34.78719270271286 35.0 33.0 38.0 29.0 40.0 43 34.71313273204245 35.0 33.0 38.0 29.0 40.0 44 34.53353244003878 35.0 33.0 37.0 29.0 40.0 45 34.38103681088319 35.0 33.0 37.0 29.0 40.0 46 34.25560311302061 35.0 33.0 37.0 29.0 40.0 47 34.15188903337053 35.0 33.0 37.0 29.0 39.0 48 34.08309743469848 35.0 33.0 36.0 29.0 39.0 49 34.068078702879234 35.0 33.0 37.0 29.0 39.0 50 33.960835567616904 35.0 32.0 37.0 28.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 77.0 14 430.0 15 1900.0 16 179.0 17 4.0 18 0.0 19 2.0 20 19.0 21 47.0 22 134.0 23 349.0 24 753.0 25 1826.0 26 3755.0 27 8121.0 28 16321.0 29 30214.0 30 52117.0 31 83085.0 32 125166.0 33 184225.0 34 262592.0 35 240108.0 36 287048.0 37 327200.0 38 318357.0 39 274518.0 40 146649.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 58.65429334397657 12.468776372021601 28.876930284001833 2 24.144552925000717 36.293398094703356 21.866602175887326 17.695446804408597 3 36.59180888180092 16.93030936970974 19.352687895633174 27.125193852856167 4 19.232317321693422 22.48836882862985 23.46828761760125 34.811026232075484 5 19.222804368010095 35.310308321170844 21.155582877698084 24.311304433120977 6 30.580763708377656 26.361747609923235 22.511834114382065 20.545654567317044 7 24.41907562840458 23.280819010348402 29.62219621545107 22.67790914579595 8 35.36510293438683 25.256934309038236 19.253203540002605 20.124759216572325 9 31.16591605938789 24.966429843446377 24.32779355283875 19.53986054432698 10 23.89379146590811 23.11284138819785 29.505630822984646 23.48773632290939 11 21.338950344918562 33.27508587026192 23.219766987598494 22.166196797221033 12 21.64281522546123 22.637235983825445 30.78691998464398 24.93302880606935 13 21.69139470893744 23.357134038785794 19.760603349574414 35.19086790270236 14 16.989289682546392 35.352165317377505 21.358483609815 26.300061390261103 15 18.366173458774664 36.57104950287418 20.88347012256067 24.179306915790487 16 20.931711367683693 31.365434407972952 16.584206974813082 31.118647249530273 17 31.02047356751829 29.22311723848679 15.27729625789998 24.47911293609494 18 21.572292528822135 28.041904349576104 17.953142149741502 32.43266097186026 19 23.81088078958361 31.375031921244585 20.593092496351254 24.22099479282055 20 31.35600601387792 23.642776328050612 23.146411544751473 21.854806113319995 21 24.09639623946599 34.55950373668821 18.8411023864407 22.5029976374051 22 29.880018400166414 25.653307379177033 20.77075219136173 23.695922029294824 23 26.48951714783891 22.656642409339437 27.217025565745928 23.636814877075725 24 27.83393004216141 25.694572458265615 22.104806536117938 24.36669096345504 25 21.990822085763064 26.59511582369675 21.149584880241193 30.264477210298992 26 23.852091938713322 32.262708865667825 22.629870779107303 21.25532841651155 27 26.47476730230462 26.376024997649516 22.20549787617971 24.943709823866154 28 23.349610905689037 23.696959598595335 25.95427698341089 26.999152512304743 29 26.3621502816063 26.37858876322176 22.903841750995923 24.355419204176016 30 23.717963901378305 25.192821517427667 25.26480883651308 25.824405744680952 31 23.351012826816316 26.193436452723134 24.580665396983278 25.874885323477276 32 24.144343306088707 25.96273735816874 25.493964652660818 24.39895468308173 33 20.626372126821284 25.06496280641252 28.12280755048872 26.185857516277466 34 21.789781563357433 27.893371649915334 25.471814289184085 24.845032497543155 35 20.774317853008547 27.20960744644963 24.307378488187396 27.70869621235443 36 20.941165833020342 26.93621562326738 26.061880602769016 26.060737940943262 37 21.528393087040158 30.64899058062561 21.649208329026866 26.17340800330737 38 24.354553467835256 26.63114799385055 21.963708506284537 27.05059003202966 39 23.60670770371382 28.118968758070533 24.6580146236197 23.616308914595947 40 21.226635173358996 28.62818734352284 24.78504567779347 25.360131805324706 41 20.302473266452076 29.37423793188268 22.393495608107212 27.929793193558027 42 20.310209866799813 31.557330842205296 24.177578773871073 23.954880517123822 43 21.582566166282195 26.56048845470208 24.31145972666314 27.545485652352582 44 21.23103508630581 29.253961065841345 22.4799619937712 27.035041854081644 45 20.793222033152066 27.50681814189555 28.615400132707986 23.0845596922444 46 20.903569973518028 30.157734402488934 23.874805551954665 25.06389007203837 47 21.59963053699272 28.34481400600673 25.14607330245408 24.90948215454647 48 23.58563874131338 27.194718659730704 22.373711427420027 26.84593117153589 49 20.775535421227257 29.016104418440904 23.458669070365733 26.74969108996611 50 20.54035288770847 32.94312305715318 24.284243798054984 22.23228025708337 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 21078.0 1 15629.5 2 7905.0 3 5299.5 4 4906.5 5 4343.0 6 3207.5 7 2627.0 8 2744.0 9 2924.5 10 3125.0 11 3584.0 12 4003.5 13 4013.0 14 4244.5 15 4636.0 16 4677.5 17 5263.5 18 6085.5 19 7189.5 20 8476.0 21 9291.0 22 10228.0 23 13677.5 24 16619.5 25 18359.0 26 20941.5 27 24603.5 28 26457.0 29 25350.5 30 27309.5 31 31342.0 32 38433.5 33 46833.0 34 51742.0 35 66985.0 36 77477.0 37 71618.0 38 71740.5 39 89903.5 40 111754.0 41 131756.0 42 153637.5 43 156953.0 44 146773.5 45 141009.5 46 143721.5 47 150512.5 48 167295.0 49 205700.0 50 271936.0 51 300292.0 52 279805.5 53 259313.0 54 229438.5 55 189270.5 56 153321.5 57 127508.0 58 113254.5 59 120030.5 60 126204.5 61 111582.0 62 91988.5 63 82744.5 64 80953.0 65 73421.5 66 59098.0 67 50156.5 68 46232.5 69 44518.5 70 38974.5 71 29909.5 72 24042.5 73 20527.5 74 17175.5 75 13968.0 76 11661.5 77 10085.0 78 9191.5 79 8543.5 80 7309.0 81 6188.5 82 5134.0 83 4561.5 84 4093.5 85 3048.0 86 2260.5 87 1400.5 88 479.0 89 199.0 90 143.0 91 126.0 92 108.0 93 103.5 94 62.0 95 14.5 96 8.5 97 8.0 98 4.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 24 37434.0 25 27360.0 26 34909.0 27 38912.0 28 42681.0 29 30743.0 30 29793.0 31 24479.0 32 25006.0 33 19416.0 34 20957.0 35 20662.0 36 19718.0 37 20267.0 38 25188.0 39 27263.0 40 29993.0 41 27805.0 42 30219.0 43 32686.0 44 34928.0 45 36809.0 46 36865.0 47 65758.0 48 165373.0 49 388413.0 50 1071559.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.852833489082787 #Duplication Level Percentage of deduplicated Percentage of total 1 71.25276441135078 8.445471522045848 2 12.36895469077494 2.9321432076752965 3 4.863341345371584 1.7293312550178372 4 2.590926515910959 1.22839282302168 5 1.5098304868771701 0.8947884678847946 6 1.0283079500596801 0.7313017744534467 7 0.761995140362063 0.6322261062741259 8 0.5770083918080043 0.5471347511922973 9 0.44393351211983934 0.4735682999442153 >10 3.0800615261556903 7.452816019461918 >50 0.4627859195289431 3.8643835180851625 >100 0.6133607871223838 17.591946022818494 >500 0.36680330957638385 30.959219788421287 >1k 0.07314657438050456 13.962496980155104 >5k 0.00463856325339785 3.7401282491776775 >10k+ 0.0021408753477220846 4.814651214370839 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT 36142 1.5280763201020127 No Hit CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC 23267 0.9837239704447326 No Hit CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA 16271 0.6879345305843575 No Hit AAGCAGTGGTATCAACGCAGAGTGCAG 14097 0.5960182581063049 No Hit AAGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTG 13415 0.5671834384972746 Illumina Single End Adapter 2 (100% over 34bp) AAGCAGTGGTATCAACGCAGAGTG 10650 0.45027980767767234 No Hit TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA 8652 0.36580477896969216 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGT 8189 0.3462292342791041 No Hit AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG 8009 0.3386188713324393 No Hit CCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAG 7987 0.3376887158611802 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGTGC 7547 0.3190856064359994 No Hit TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA 6995 0.29574716006622703 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTCCCGGGGCAGCACTGCA 6942 0.29350633097637574 No Hit AAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCT 6415 0.2712248794603069 Illumina Single End Adapter 2 (100% over 32bp) AAGCAGTGGTATCAACGCAGAGTGCAGTG 6065 0.2564269515084585 No Hit AGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCT 5814 0.24581472317727582 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGG 5723 0.2419672619097952 No Hit AGCAGTGGTATCAACGCAGAGTGCAG 5093 0.21533099159646812 No Hit AAGCAGTGGTATCAACGCAGAGTGC 5004 0.21156808991728382 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTCCCGGGGACAGCACTGC 4929 0.20839710535617345 No Hit AAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGC 4434 0.187468607252845 Illumina Single End Adapter 2 (96% over 31bp) CTTTTCCAAGTCTTTTGCCAACCAGTTTGTTAGACTTTCCCCTATTCT 4421 0.1869189699289192 No Hit ACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGC 4229 0.17880124945247666 No Hit ATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTT 3681 0.1556319222592969 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTCCCGGGG 3644 0.1540675698758158 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGA 3638 0.15381389111092694 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCGTATGCCGTC 3307 0.1398192792478932 Illumina Single End Adapter 2 (100% over 25bp) AAGCAGTGGTATCAACGCAGAGTGCA 3302 0.1396078802771525 No Hit AGCAGTGGTATCAACGCAGAGTGCAGTGC 3262 0.137916688511227 No Hit CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCC 3225 0.13635233612774586 No Hit ACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAAT 3103 0.131194201241673 No Hit CATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCC 3100 0.13106736185922857 No Hit CAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCT 3095 0.1308559628884879 No Hit CTTTTCCAAGTCTTTTGCCAACCAGTTTGTTAGACTTTCCCCTATTCTG 3054 0.12912249132841422 No Hit AGCAGTGGTATCAACGCAGAGTGCAGT 2836 0.11990549620412008 No Hit ACCCAAAGTCTTCAAGCCTGGAGTTCCTGCTTGGTTCTTCCTGAGGACT 2834 0.11982093661582381 No Hit AAGCAGTGGTATCAAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAA 2822 0.11931357908604615 Illumina Single End Adapter 2 (100% over 34bp) AGCAGTGGTATCAACGCAGAGTGCAGTG 2716 0.11483192090634348 No Hit ACGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 2636 0.11144953737449244 Illumina Single End Adapter 2 (97% over 34bp) AAGCAGTGGTATCAACGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGA 2630 0.1111958586096036 Illumina Single End Adapter 2 (97% over 34bp) AAGCAGTGGTATCAACGCAGAGTAGATCGGAAGAGCTCGTATGCCGTCTT 2620 0.1107730606681222 Illumina Single End Adapter 2 (100% over 27bp) CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG 2609 0.11030798293249269 No Hit ATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 2499 0.10565720557619748 Illumina Single End Adapter 1 (100% over 32bp) AGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGA 2474 0.10460021072249404 Illumina Single End Adapter 2 (100% over 34bp) AAGCAGTGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 2423 0.10244394122093899 Illumina Single End Adapter 2 (97% over 34bp) AAGCAGTGGTATCAACGCAGAGTCGATCGGAAGAGCTCGTATGCCGTCTT 2404 0.10164062513212437 Illumina Single End Adapter 2 (96% over 27bp) AAGCAGTGGTATCAACGCAGAGTGCAGTGCTG 2384 0.10079502924916159 No Hit AAGCAGTGGTATCAACGCAGAGTGCAGGATCGGAAGAGCTCGTATGCCGT 2375 0.10041451110182835 Illumina Single End Adapter 2 (95% over 24bp) >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.17326259641907055 0.0 0.0 0.0 0.0 2 0.5175046803732122 0.0 0.0 0.0 0.0 3 0.8719784745112032 0.0 0.0 0.0 0.0 4 0.9469828293300006 0.0 0.0 0.0 0.0 5 1.3690197345167165 0.0 0.0 0.0 0.0 6 1.5108684438837203 0.0 0.0 0.0 0.0 7 1.7368962233996674 0.0 0.0 0.0 0.0 8 2.0690462862274415 0.0 0.0 0.0 0.0 9 2.186880072518303 0.0 0.0 0.0 0.0 10 2.348050647811006 0.0 0.0 0.0 0.0 11 2.6471801914090842 0.0 0.0 0.0 0.0 12 2.7684386410259445 0.0 0.0 0.0 0.0 13 2.9103296301870967 0.0 0.0 0.0 0.0 14 3.153818964686225 0.0 0.0 0.0 0.0 15 3.422422496909347 0.0 0.0 0.0 0.0 16 3.683880743921434 0.0 0.0 0.0 0.0 17 4.5868925873373705 0.0 0.0 0.0 0.0 18 4.766497152878662 0.0 0.0 0.0 0.0 19 5.234957272040034 0.0 0.0 0.0 0.0 20 5.3553701257739315 0.0 0.0 0.0 0.0 21 5.563217593806179 0.0 0.0 0.0 0.0 22 5.651370964605047 0.0 0.0 0.0 0.0 23 5.812626099486047 0.0 0.0 0.0 0.0 24 6.053536366542138 0.0 0.0 0.0 0.0 25 6.211578237067879 0.0 0.0 0.0 0.0 26 6.577129337272683 0.0 0.0 0.0 0.0 27 6.658517941007849 0.0 0.0 0.0 0.0 28 6.7761826081221175 0.0 0.0 0.0 0.0 29 6.932533286881933 0.0 0.0 0.0 0.0 30 7.006649766023619 0.0 0.0 0.0 0.0 31 7.076961063691973 0.0 0.0 0.0 0.0 32 7.135307179616404 0.0 0.0 0.0 0.0 33 7.19170842501002 0.0 0.0 0.0 0.0 34 7.260582209677337 0.0 0.0 0.0 0.0 35 7.3284412792851 0.0 0.0 0.0 0.0 36 7.38475796509042 0.0 0.0 0.0 0.0 37 7.461918589410772 0.0 0.0 0.0 0.0 38 7.5170514409799445 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 20 2.6713706E-5 87.17693 44 TCGTAGG 60 0.0 87.17693 44 AAGGTTT 90 0.0 82.33377 44 ACTCGCA 60 0.0 79.91219 44 GTATATG 120 0.0 79.91219 44 GGTCCCT 80 0.0 76.279816 44 TGTTATG 40 1.880835E-9 76.279816 44 CGTGCGC 135 0.0 74.261826 44 CTATCAT 4245 0.0 74.03365 44 ATCCGAG 140 0.0 71.60962 44 ATGTGTG 95 0.0 68.8239 44 GAGCGCT 115 0.0 68.225426 44 CGCTACG 110 0.0 67.36399 44 GTTCGTA 150 0.0 66.83565 44 AATCGCA 125 0.0 66.25447 44 GAAAATC 185 0.0 65.97174 44 GAACACA 2280 0.0 64.42682 44 TAGCGAA 55 0.0 63.672237 43 CACGCTT 100 0.0 63.672237 43 GGGTACG 20 1.267431E-4 63.672234 43 >>END_MODULE