Basic Statistics
Measure | Value |
---|---|
Filename | ERR840892.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9499449 |
Sequences flagged as poor quality | 0 |
Sequence length | 24-50 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA | 80655 | 0.8490492448562016 | No Hit |
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC | 26775 | 0.281858453053435 | No Hit |
CAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCT | 25494 | 0.26837346039754517 | No Hit |
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 20182 | 0.21245442761995986 | No Hit |
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA | 19754 | 0.20794890314164535 | No Hit |
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAA | 18944 | 0.19942209279717169 | No Hit |
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG | 14664 | 0.15436684801402692 | No Hit |
CCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAGACA | 14007 | 0.14745065740128718 | No Hit |
AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG | 12138 | 0.12777583205089055 | No Hit |
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA | 10960 | 0.11537511280917451 | No Hit |
CAGAGTGTTGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAA | 10297 | 0.10839576063832757 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AATGCGC | 30 | 1.0014455E-5 | 56.610306 | 44 |
TAAGCCA | 10520 | 0.0 | 55.727795 | 44 |
CGTTCGA | 200 | 0.0 | 50.156254 | 43 |
CGATACG | 50 | 7.2759576E-12 | 49.339664 | 41 |
CCGGTAT | 100 | 0.0 | 47.552658 | 44 |
CGGTCTA | 65 | 0.0 | 47.07718 | 37 |
TACGGAA | 100 | 0.0 | 46.87268 | 41 |
TTAAGCC | 10350 | 0.0 | 45.473957 | 43 |
ATTAAGC | 10285 | 0.0 | 42.872334 | 42 |
GTCCGTT | 120 | 0.0 | 41.864994 | 33 |
ATCCGTT | 150 | 0.0 | 41.718227 | 19 |
CACGATA | 160 | 0.0 | 41.718224 | 19 |
CTAGACG | 145 | 0.0 | 41.452095 | 5 |
ATTCGCG | 105 | 0.0 | 41.452095 | 3 |
CGAATGT | 110 | 0.0 | 41.45209 | 11 |
CGATACT | 30 | 3.8126636E-6 | 41.45209 | 4 |
TCGCGTA | 130 | 0.0 | 41.329193 | 24 |
CGAACAC | 170 | 0.0 | 40.874817 | 35 |
ACGATAT | 75 | 0.0 | 40.69749 | 26 |
CGACTAG | 70 | 0.0 | 40.351868 | 37 |