FastQCFastQC Report
Tue 24 May 2016
ERR840892.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR840892.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9499449
Sequences flagged as poor quality0
Sequence length24-50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA806550.8490492448562016No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC267750.281858453053435No Hit
CAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCT254940.26837346039754517No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA201820.21245442761995986No Hit
CAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACA197540.20794890314164535No Hit
CACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAA189440.19942209279717169No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG146640.15436684801402692No Hit
CCATCTCATCCCTGAGCCATGATCAAACTCTACGTACTGAGTCGGAGACA140070.14745065740128718No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCG121380.12777583205089055No Hit
CATCCTGCTTCGTCAGGTTTATACCACTTTATTTGGTGTGCTGTGTTA109600.11537511280917451No Hit
CAGAGTGTTGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAA102970.10839576063832757No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATGCGC301.0014455E-556.61030644
TAAGCCA105200.055.72779544
CGTTCGA2000.050.15625443
CGATACG507.2759576E-1249.33966441
CCGGTAT1000.047.55265844
CGGTCTA650.047.0771837
TACGGAA1000.046.8726841
TTAAGCC103500.045.47395743
ATTAAGC102850.042.87233442
GTCCGTT1200.041.86499433
ATCCGTT1500.041.71822719
CACGATA1600.041.71822419
CTAGACG1450.041.4520955
ATTCGCG1050.041.4520953
CGAATGT1100.041.4520911
CGATACT303.8126636E-641.452094
TCGCGTA1300.041.32919324
CGAACAC1700.040.87481735
ACGATAT750.040.6974926
CGACTAG700.040.35186837