ERR840890.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR840890.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5857675
Sequences flagged as poor quality	0
Sequence length	24-50
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA	23662	0.4039486656395242	No Hit
ATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCAT	13157	0.22461130055866874	No Hit
CTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGC	12537	0.21402689633685718	No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG	11678	0.1993623750037344	No Hit
CCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGA	8313	0.1419163746708378	No Hit
TGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTA	7252	0.12380338615577	No Hit
CTTTTCCAAGTCTTTTGCCAACCAGTTTGTTAGACTTTCCCCTATTCT	7112	0.12141335939600609	No Hit
CTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTTGGG	6045	0.10319794116266266	No Hit
AGCCATTGTGGCTCCGGCCGGTTGCGCGGG	5980	0.10208828588134371	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATACG	60	0.0	69.79501	44
TATACCG	55	0.0	69.2182	44
TTACCCG	95	0.0	64.117905	44
ACTAGCC	115	0.0	62.89827	44
CGTTAGC	110	0.0	56.806293	43
AACCGAC	135	0.0	56.40001	44
ACATACG	70	3.6379788E-12	54.385727	44
CGAACCG	95	0.0	53.816486	43
ACGGATA	25	1.8969451E-5	50.819714	41
TAAGCCA	3735	0.0	50.55616	44
CGCACTA	40	2.6338967E-9	50.111378	40
ATATCGT	180	0.0	48.84711	38
TTACGTT	100	0.0	48.84711	38
CCCGTTA	55	0.0	47.791477	36
ACGATAC	45	2.3283064E-10	47.35257	35
CGGTAAC	140	0.0	47.35257	35
AACGATA	45	2.564775E-10	46.905514	34
TAAGGCG	90	0.0	46.905514	34
CGTTATA	75	0.0	46.90551	34
CGTCGTT	140	0.0	45.230316	34