Basic Statistics
Measure | Value |
---|---|
Filename | SRR7458454_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 86964829 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGGCGTGGAGAACAAAAAGTTC | 471357 | 0.5420087700051707 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 332414 | 0.3822395833147674 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 232983 | 0.26790485611142867 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 152615 | 0.1754904847797723 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCTCTCTAAAAAAAAAAAAAA | 151741 | 0.1744854807913208 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 96742 | 0.11124267259813735 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTGGTAT | 1287495 | 0.0 | 125.97792 | 6 |
GGTATCA | 1288510 | 0.0 | 125.88762 | 8 |
TGGTATC | 1295005 | 0.0 | 125.18176 | 7 |
GTATCAA | 1306775 | 0.0 | 124.282616 | 9 |
AAGCAGT | 1313920 | 0.0 | 123.64931 | 1 |
CAGTGGT | 1336050 | 0.0 | 121.45569 | 4 |
AGCAGTG | 1346575 | 0.0 | 120.56333 | 2 |
AGTGGTA | 1370380 | 0.0 | 118.42252 | 5 |
GCAGTGG | 1398000 | 0.0 | 116.08126 | 3 |
CAACGCA | 1281455 | 0.0 | 25.830133 | 10-14 |
TCAACGC | 1285515 | 0.0 | 25.724031 | 10-14 |
ATCAACG | 1286130 | 0.0 | 25.679718 | 10-14 |
GTACATG | 1217255 | 0.0 | 25.671093 | 20-24 |
AGAGTAC | 1289875 | 0.0 | 25.534195 | 15-19 |
CAGAGTA | 1299625 | 0.0 | 25.375305 | 15-19 |
TACATGG | 1211045 | 0.0 | 25.297424 | 20-24 |
GAGTACA | 1284340 | 0.0 | 25.215786 | 20-24 |
CGCAGAG | 1308515 | 0.0 | 25.18443 | 15-19 |
AGTACAT | 1311240 | 0.0 | 25.101723 | 20-24 |
GCAGAGT | 1320935 | 0.0 | 24.95221 | 15-19 |