Basic Statistics
Measure | Value |
---|---|
Filename | SRR4896134_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 775307 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 15103 | 1.9480025331900783 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 5595 | 0.7216496175063556 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4929 | 0.6357481616959476 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 3205 | 0.41338463344197846 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2251 | 0.2903366021459886 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 22180 | 0.0 | 102.89846 | 1 |
GGTATCA | 22605 | 0.0 | 101.32971 | 8 |
GTGGTAT | 22580 | 0.0 | 100.51065 | 6 |
CAGTGGT | 22715 | 0.0 | 100.040985 | 4 |
TGGTATC | 22715 | 0.0 | 100.00906 | 7 |
AGCAGTG | 22790 | 0.0 | 99.99811 | 2 |
AGTGGTA | 22725 | 0.0 | 99.90124 | 5 |
GTATCAA | 23030 | 0.0 | 99.59791 | 9 |
GCAGTGG | 23035 | 0.0 | 98.840096 | 3 |
ATAGCGA | 190 | 0.0 | 57.236538 | 1 |
CGATAAG | 130 | 1.8189894E-12 | 55.765335 | 145 |
TAGCGAC | 185 | 0.0 | 54.871647 | 2 |
CGGTCTG | 215 | 0.0 | 47.206005 | 145 |
AAATATA | 2290 | 0.0 | 35.139465 | 145 |
TTCGATA | 230 | 2.7284841E-11 | 34.67149 | 145 |
AGCGGTA | 175 | 1.0075928E-7 | 33.146957 | 5 |
AGGTATC | 315 | 0.0 | 32.226208 | 7 |
CGGTATC | 185 | 1.6410377E-7 | 31.355227 | 7 |
GCGGTAT | 190 | 2.0733205E-7 | 30.53009 | 6 |
GAGGTAT | 335 | 0.0 | 30.302254 | 6 |