Basic Statistics
Measure | Value |
---|---|
Filename | SRR4896118_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 534784 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 19792 | 3.700933460986118 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3476 | 0.64998204882719 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2725 | 0.5095515198659646 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1469 | 0.2746903422690282 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCAGAGACCCGCTGGGCACA | 873 | 0.1632434777405457 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 862 | 0.16118657252273816 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGGCGCAGTGGCTCACG | 643 | 0.12023545955002393 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 20125 | 0.0 | 82.60534 | 1 |
AGCAGTG | 20710 | 0.0 | 80.13194 | 2 |
GGTATCA | 20805 | 0.0 | 79.584366 | 8 |
AGTGGTA | 20820 | 0.0 | 79.42256 | 5 |
GTGGTAT | 20805 | 0.0 | 79.3753 | 6 |
GTATCAA | 20855 | 0.0 | 79.28186 | 9 |
CAGTGGT | 20985 | 0.0 | 78.770905 | 4 |
TGGTATC | 21090 | 0.0 | 78.337036 | 7 |
GCAGTGG | 21230 | 0.0 | 77.82771 | 3 |
GCCGACG | 150 | 4.397596E-5 | 28.997417 | 145 |
AGGGGTA | 255 | 3.0195224E-9 | 28.428843 | 5 |
CGGTCTG | 350 | 3.6379788E-12 | 26.926174 | 145 |
CATGGGG | 4255 | 0.0 | 23.85172 | 25-29 |
ATGGGGG | 1350 | 0.0 | 22.230938 | 25-29 |
GGGGTAT | 295 | 3.8707185E-7 | 22.116676 | 6 |
CGACGTA | 60 | 4.5614433E-7 | 21.749691 | 85-89 |
CGACCTA | 135 | 0.0 | 21.481176 | 45-49 |
CCGATCG | 115 | 0.0 | 21.43568 | 100-104 |
TCGATTT | 75 | 7.783456E-9 | 21.265171 | 135-139 |
TACGCTA | 55 | 5.2133128E-6 | 21.092188 | 70-74 |