Basic Statistics
Measure | Value |
---|---|
Filename | SRR4896107_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 913923 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 18470 | 2.020958001932329 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5568 | 0.6092416976047216 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 5109 | 0.5590186481793323 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2449 | 0.2679656820104101 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 2345 | 0.2565861675436552 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1660 | 0.181634557834741 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 973 | 0.10646411130915844 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 43025 | 0.0 | 115.46854 | 1 |
GTATCAA | 44025 | 0.0 | 112.866325 | 9 |
GGTATCA | 44200 | 0.0 | 112.67782 | 8 |
AGCAGTG | 44045 | 0.0 | 112.65867 | 2 |
GTGGTAT | 44105 | 0.0 | 112.21364 | 6 |
AGTGGTA | 44155 | 0.0 | 112.174805 | 5 |
TGGTATC | 44290 | 0.0 | 111.76129 | 7 |
CAGTGGT | 44330 | 0.0 | 111.72174 | 4 |
GCAGTGG | 44715 | 0.0 | 110.74358 | 3 |
GGGTATC | 405 | 0.0 | 44.75609 | 7 |
GGGGTAT | 425 | 0.0 | 42.649925 | 6 |
CGGTCTG | 245 | 0.0 | 41.426823 | 145 |
AGGGGTA | 505 | 0.0 | 40.202923 | 5 |
AGGTATC | 485 | 0.0 | 37.373646 | 7 |
GTGCGAA | 275 | 0.0 | 36.915607 | 2 |
GAGGTAT | 500 | 0.0 | 36.252438 | 6 |
GTATCAC | 585 | 0.0 | 34.699387 | 9 |
AGAGGTA | 540 | 0.0 | 33.56891 | 5 |
AAATATA | 2635 | 0.0 | 31.91516 | 145 |
GGTGCGA | 330 | 0.0 | 30.759642 | 1 |