Basic Statistics
Measure | Value |
---|---|
Filename | SRR4896106_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 476609 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 13453 | 2.822649173641287 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3787 | 0.7945716509759572 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1757 | 0.3686459970332075 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1456 | 0.30549150351755844 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 916 | 0.1921910832569255 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGAAGATGGGTGACCACCT | 656 | 0.13763902905736147 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATCAAGAAGATGGGTGACCA | 644 | 0.13512124194045855 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATGGAAACTCCCTGTAAACT | 590 | 0.12379119991439524 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGTGGGAAGATTTATAGGTA | 579 | 0.12148322839056754 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAGGCCGGGCGCGGTGGCT | 534 | 0.11204152670218144 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 489 | 0.10259982501379537 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 25935 | 0.0 | 111.05448 | 1 |
AGTGGTA | 26580 | 0.0 | 108.29367 | 5 |
AGCAGTG | 26610 | 0.0 | 108.21018 | 2 |
GGTATCA | 26865 | 0.0 | 108.078094 | 8 |
GTATCAA | 26945 | 0.0 | 107.73029 | 9 |
GTGGTAT | 26835 | 0.0 | 107.22634 | 6 |
CAGTGGT | 26910 | 0.0 | 107.03077 | 4 |
TGGTATC | 26970 | 0.0 | 106.85089 | 7 |
GCAGTGG | 27240 | 0.0 | 105.57442 | 3 |
TAGCCGA | 125 | 0.0 | 63.797646 | 145 |
GCGGTAT | 115 | 2.4811015E-9 | 50.432922 | 6 |
GGGGTAT | 235 | 0.0 | 46.274887 | 6 |
AGCGGTA | 130 | 7.3323463E-9 | 44.61842 | 5 |
AGAGGTA | 215 | 0.0 | 43.840195 | 5 |
CGGTATC | 135 | 1.0244548E-8 | 42.96138 | 7 |
AGGGGTA | 260 | 0.0 | 41.82977 | 5 |
GGGTATC | 260 | 0.0 | 41.82538 | 7 |
GAGGTAT | 260 | 0.0 | 36.24866 | 6 |
AGGTATC | 275 | 0.0 | 34.27146 | 7 |
ACGGAAT | 90 | 0.0036269957 | 32.22103 | 145 |