FastQCFastQC Report
Sun 19 Mar 2023
SRR4896102_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4896102_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences731030
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG157732.1576405893055006No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA37300.5102389778805247No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGACGCCGTGGCTCAT35330.48329069942410025No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGACGCCGTGGCTCATG33320.4557952478010478No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTCAGCCACAGTGGCTCAT28290.3869882220975883No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA21850.2988933422704951No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGTCAGCCACAGTGGCTCATG21380.2924640575626171No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG21350.29205367768764623No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC16150.22092116602601808No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGGCGCGGTGGCTCACG11620.15895380490540742No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCCGGACGCAGTGGCTCA10260.14034991724005855No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT9080.12420830882453524No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCAGACGCAGTGGCTCAC8290.11340163878363406No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGACACAGGATCCGGAGCTGGT8200.11217049915872125No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC7890.10792990711735496No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCAGGCACAGTGGCTCAC7720.10560442115918635No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT269050.0103.583931
GTATCAA275350.0101.310979
GGTATCA277050.0100.964798
AGCAGTG276700.0100.720122
GTGGTAT275550.0100.593466
AGTGGTA277700.099.87375
TGGTATC278300.099.781837
CAGTGGT278650.099.62494
GCAGTGG289400.095.974373
AGGTATC2650.049.2484447
AGCGGTA1203.614332E-948.339745
GAGGTAT2950.044.2401286
GCGGTAT1604.584217E-836.2523276
CGGTATC1604.584217E-836.2523277
GGGGTAT2451.8189894E-1235.512486
CTACTAA38650.035.450207145
AGCGCAT1707.822928E-834.11517145
AGAGGTA3950.033.0423555
AGGGGTA2653.6379788E-1232.834545
CGAGTAA2008.920324E-932.633792