Basic Statistics
Measure | Value |
---|---|
Filename | SRR4896101_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1770825 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 22966 | 1.2969096325159177 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9584 | 0.5412166645490096 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 8198 | 0.46294806093205143 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 3827 | 0.21611395818333262 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 3242 | 0.18307850860474637 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 55095 | 0.0 | 114.516556 | 1 |
GGTATCA | 55915 | 0.0 | 113.0287 | 8 |
GTGGTAT | 55640 | 0.0 | 112.75339 | 6 |
GTATCAA | 56295 | 0.0 | 112.33032 | 9 |
TGGTATC | 55950 | 0.0 | 112.18049 | 7 |
AGTGGTA | 56165 | 0.0 | 111.71204 | 5 |
AGCAGTG | 56515 | 0.0 | 111.44022 | 2 |
CAGTGGT | 56655 | 0.0 | 110.832054 | 4 |
GCAGTGG | 57510 | 0.0 | 109.222145 | 3 |
CGGTATC | 265 | 0.0 | 43.774796 | 7 |
AGGGGTA | 540 | 0.0 | 41.626225 | 5 |
AAATATA | 4240 | 0.0 | 35.73398 | 145 |
GCGGTAT | 340 | 0.0 | 34.11859 | 6 |
CACGAAC | 130 | 1.6529477E-5 | 33.46908 | 2 |
TGCGCCC | 375 | 0.0 | 32.863865 | 145 |
CACGATA | 90 | 0.0036259806 | 32.227665 | 1 |
GTGCCGG | 850 | 0.0 | 31.556131 | 145 |
CGGTCTG | 345 | 0.0 | 31.51905 | 145 |
GGGTATC | 715 | 0.0 | 31.434437 | 7 |
AGCGGTA | 400 | 0.0 | 30.816835 | 5 |