FastQCFastQC Report
Sun 19 Mar 2023
SRR4896100_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4896100_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432085
Sequences flagged as poor quality0
Sequence length151
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGACATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT90732.0998183227837113No Hit
GATAGACATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGT11170.2585139498015437No Hit
GATAGACATGTACTCTGCGTTGATACCACTGCGTCCCATGTACTCTGCGT10930.25295948713794736No Hit
GATAGACATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTT10600.2453221009755025No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATAGAC433000.0144.598271
ATAGACA433400.0144.464812
TAGACAT172250.0144.285233
TAGACAG134650.0143.786153
AGACAGT48150.0143.712344
AGACATG77400.0143.699224
TAGACAA120500.0143.052153
AGACATT50950.0142.071934
GACAGTT16500.0141.842245
GACATGT41550.0141.602845
GACATTG18400.0141.372075
AGACAAT43700.0141.268434
GACATGA13650.0141.200425
GACAGTC3800.0141.102625
GACAGAT12950.0140.999575
GACAATG14500.0140.918535
AGACATA44700.0140.863744
ACATGTA28750.0140.127696
GACATAG16250.0140.011355
GACAGGT16050.0139.950245