FastQCFastQC Report
Sun 19 Mar 2023
SRR4896065_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4896065_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1570921
Sequences flagged as poor quality0
Sequence length151
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCTTA1571650.0144.848982
CGCTTAG520500.0144.528353
AACGCTT1575150.0144.527131
CGCTTAA489000.0144.48843
CGCTTAT533450.0144.37483
GCTTAGG179600.0143.949864
GCTTAAG171400.0143.734454
GCTTATG191250.0143.667864
GCTTAGA166000.0142.910254
GCTTAAT172250.0142.814834
GCTTAGT175950.0142.776694
GCTTATA168350.0142.421784
GCTTAAA147250.0142.359314
CTTAGAG51150.0141.376635
CTTAGGT56200.0141.05025
CTTAAGT57400.0140.626135
CTTATAG59250.0140.515565
GCTTATT179850.0139.76124
CTTATGG64400.0139.517465
CTTAGTG55100.0138.34295