FastQCFastQC Report
Sun 19 Mar 2023
SRR4896042_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4896042_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5292875
Sequences flagged as poor quality0
Sequence length150
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA4079617.707739177668091No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGGACTCTGCGTTGATA1793933.3893299955128353No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACTCTGCGTTGATA1462382.7629218524903765No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACGCTGCGTTGATA1031331.9485251399286776No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATAC909771.7188578985900858No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGTTGATA766651.44845665163073No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACGCGGCGTTGATA503370.9510332286328318No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCATGTACTCTGCGTTGATA454880.8594195026332571No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCATGTACTCTGCGTTGATA426070.8049878374229507No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCAGGTACTCTGCGTTGATA402660.7607585669414071No Hit
AGATGTACTCTGCGTTGATACCAATGCTTCCCATGTACTCTGCGTTGATA303240.5729211439907422No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCAGGGACTCTGCGTTGATA288060.5442410788087759No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGAACGGAAGAGCGGCGGGTA249900.4721441560588527No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCCATGTACTCTGCGTTGATA247110.46687291878232523No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGGACGCTGCGTTGATA233550.4412535720189878No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACGCTGCGTTGATA223730.42270032827149706No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCATGGACTCTGCGTTGATA202900.38334553527147347No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCATGGACTCTGCGTTGATA191340.36150485322249254No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGTACGCTGCGTTGATA188310.3557801761802423No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCCACGGACTCTGCGTTGATA186220.35183147155373967No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCACGGACTCTGCGTTGATA184290.3481850601043856No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCACGGACTCTGCGTTGATA177550.335450960017004No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCACGGACGCTGCGTTGATA177240.3348652669862787No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCACGGACGCTGCGTTGATA174930.3305009092411969No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACTCGGCGTTGATA156990.2966062867534185No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCATGTACTCTGCGTTGATAC139880.26427981012209806No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCATGTACTCTGCGTTGATAC136540.25796944004912264No Hit
AGATGTACTCTGCGTTGATACCAATGCTTCCCATGGACTCTGCGTTGATA129390.24446071369529795No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCCATGGACTCTGCGTTGATA120580.22781569562855727No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCCACGGACGCTGCGTTGATA118120.2231679380298987No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACGCGGCGTGGATA114610.2165363814562029No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCCACGTACTCTGCGTTGATA107990.20402900125168266No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCACGTACTCTGCGTTGATA107790.20365113478024705No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACCCTGCGTTGATA107450.20300876177880642No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCAAGTACTCTGCGTTGATA105890.2000614033016083No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCCTGCGTTGATA104390.19722740476584089No Hit
AGATGTACTCTGCGTTGATACCACCGCTTCCCATGTACTCTGCGTTGATA99360.1877240630092341No Hit
AGATGTACTCTGCGTTGATACCACAGCTTCCCATGTACTCTGCGTTGATA96800.1828873721748577No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGCACGGACGCGGCGCGGATA95410.1802612001983799No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGTACACTGCGTTGATAC95110.17969440049122642No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCACGGACGCGGCGTTGATA90400.1707956450889167No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGGACACTGCGTTGATAC90000.17003991214604539No Hit
AGATGTACTCTGCGTTGATACCACGGCTTCCCATGTACTCTGCGTTGATA89730.16952979240960725No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCACGTACTCTGCGTTGATA89530.1691519259381716No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACGCGGCGCTGATA89510.16911413929102803No Hit
AGATGTACTCTGCGTTGATACCAATGCTTCCCACGGACTCTGCGTTGATA89470.1690385659967409No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCATGGACTCTGCGTTGATAC88490.16718702028670618No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACGCGGCGCGGATA86630.16367286210235457No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCATGTACTCTGCGTTGATAC83290.15736249202937913No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGAACGGAAGAGGGGCGGGTA82000.15492525328861914No Hit
AGATGTACTCTGCGTTGATACCAATGCTTCCATGTACTCTGCGTTGATAC80950.15294145431358194No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCAAGGACTCTGCGTTGATA78310.14795361689063127No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCACGGACGCGGCGTTGATA77220.14589424462130696No Hit
AGATGTACTCTGCGTTGATACCACTGCGTAGAACGGAAGAGCGGCGGGTA73870.1395649812247597No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCATGGACCCTGCGTTGATA72950.13782679545615567No Hit
AGATGTACTCTGCGTTGATACCACTGCGGCCCATGTACTCTGCGTTGATA71830.135710743216116No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGATCGGAAGAGCGTCGTGTA71470.1350305835675318Illumina Single End PCR Primer 1 (100% over 21bp)
AGATGTACTCTGCGTTGATACCACTGCTTCGCACGGACGCGGCGCGGATA70510.13321682450464067No Hit
AGATGTACTCTGCGTTGATACCACTGCCTCCCATGTACTCTGCGTTGATA69150.1306473324988782No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGAACGGACGCGGCGCGGATA69150.1306473324988782No Hit
AGATGTACTCTGCGTTGATACCAATGCTTCCCACGGACGCTGCGTTGATA63030.11908461847294713No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCAGGTACTCTGCGTTGATAC62140.11740311267505844No Hit
AGATGTACTCTGCGTTGATACCACTGCTTAGAACGGAAGCGGCGCGGATA61870.11689299293862032No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCACGGACGCTGCGTGGATA61430.11606168670146187No Hit
AGATGTACTCTGCGTTGATACCACTGCTGCCCAGGTACTCTGCGTTGATA58120.10980799659920176No Hit
AGATGTACTCTGCGTTGATACCACCGCTTCCCACGGACTCTGCGTTGATA57650.10892001039132797No Hit
AGATGTACTCTGCGTTGATACCACTGCTCCCCACGGACGCGGCGTTGATA54600.10315754670193421No Hit
AGATGTACTCTGCGTTGATACCACTGCTTCCCAGGGACGCTGCGTTGATA54090.10219398719977328No Hit
AGATGTACTCTGCGTTGATACCACTGCGTCCCAGGTACTCTGCGTTGATA53190.10049358807831282No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATGTA5299550.0143.817951
GATGTAC5314450.0143.414732
TGTACGT162000.0139.022224
GTACGTG55650.0137.142855
TGTACTT191450.0136.328034
GTACTGA41250.0135.098195
GTACGTT56450.0134.434025
GTACTAA35450.0134.047965
GTACTTA46200.0134.025975
TGTACAT130000.0133.864624
GTACTTG63750.0133.83535
TGTACGG174050.0133.368584
GTACGTA47000.0132.204255
TGTACGA144100.0131.958364
TGTACCT48150.0131.887854
TGTACAG125150.0131.17064
GTACGAA38250.0129.882355
TGTACAA109900.0129.58694
GTACCTA10950.0129.534265
TACGGTT23350.0127.965746