Basic Statistics
Measure | Value |
---|---|
Filename | SRR4896007_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1980518 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 8083 | 0.4081255509922152 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5701 | 0.28785398567445486 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 5308 | 0.26801069215225515 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 4819 | 0.24332018189180812 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCTTTCCGGCGGTGACGAC | 3776 | 0.1906571917043925 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTTTTACCTCGTTGCACTG | 3267 | 0.1649568446234773 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC | 2761 | 0.13940797306563232 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 2741 | 0.13839813624516414 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCTTTTACCTCGTTGCACTGC | 2482 | 0.1253207494201012 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGACTGCGATAGGAATCATGT | 2221 | 0.11214237891299145 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 2068 | 0.10441712723640988 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCCAGGCGCAGTGGCTCA | 2031 | 0.10254892911854374 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTGGTAT | 52575 | 0.0 | 134.28796 | 6 |
GGTATCA | 52815 | 0.0 | 133.65048 | 8 |
TGGTATC | 52955 | 0.0 | 133.37872 | 7 |
AAGCAGT | 53030 | 0.0 | 133.10281 | 1 |
GTATCAA | 53090 | 0.0 | 132.9649 | 9 |
AGTGGTA | 53630 | 0.0 | 131.72684 | 5 |
CAGTGGT | 53740 | 0.0 | 131.42365 | 4 |
AGCAGTG | 53755 | 0.0 | 131.29308 | 2 |
GCAGTGG | 55030 | 0.0 | 128.30022 | 3 |
TACGCAC | 1125 | 0.0 | 27.903488 | 50-54 |
CAACGCA | 52445 | 0.0 | 27.392319 | 10-14 |
TCAACGC | 52480 | 0.0 | 27.390512 | 10-14 |
GTACATG | 52805 | 0.0 | 27.136023 | 20-24 |
ATCAACG | 52935 | 0.0 | 27.070745 | 10-14 |
TACATGG | 53105 | 0.0 | 26.996283 | 20-24 |
AGAGTAC | 53145 | 0.0 | 26.970818 | 15-19 |
CAGAGTA | 53235 | 0.0 | 26.93063 | 15-19 |
AACGCAG | 53345 | 0.0 | 26.895079 | 10-14 |
AGTACAT | 53230 | 0.0 | 26.846321 | 20-24 |
CGCAGAG | 53365 | 0.0 | 26.78947 | 15-19 |