Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895959_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1450251 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 18769 | 1.2941897643925087 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 13711 | 0.9454225509928971 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTAAGCGACTAAGCGTAC | 7230 | 0.49853439163289665 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5070 | 0.3495946563732761 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 2928 | 0.20189608557415234 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCTTTCCGGCGGTGACGAC | 2215 | 0.1527321822222498 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 2076 | 0.14314763444396866 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 1969 | 0.13576960126212634 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 1948 | 0.13432157605821338 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 1871 | 0.12901215031053245 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC | 1788 | 0.12328900307601925 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAACCTTAGCCAAACCAT | 1720 | 0.11860015955858676 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCTCACACCTGTAATCCCA | 1492 | 0.10287874305896015 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 41980 | 0.0 | 139.44905 | 8 |
AAGCAGT | 41975 | 0.0 | 139.10675 | 1 |
GTATCAA | 42210 | 0.0 | 138.68918 | 9 |
GTGGTAT | 42370 | 0.0 | 138.04652 | 6 |
TGGTATC | 42510 | 0.0 | 137.65962 | 7 |
CAGTGGT | 42735 | 0.0 | 136.90115 | 4 |
AGCAGTG | 42795 | 0.0 | 136.50864 | 2 |
AGTGGTA | 43145 | 0.0 | 135.55014 | 5 |
GCAGTGG | 43195 | 0.0 | 135.27785 | 3 |
CAACGCA | 41915 | 0.0 | 28.499893 | 10-14 |
AGAGTAC | 41725 | 0.0 | 28.48473 | 15-19 |
TCAACGC | 41980 | 0.0 | 28.462627 | 10-14 |
CAGAGTA | 41855 | 0.0 | 28.423779 | 15-19 |
ATCAACG | 42045 | 0.0 | 28.394651 | 10-14 |
GTACATG | 41820 | 0.0 | 28.352722 | 20-24 |
TACATGG | 41905 | 0.0 | 28.264284 | 20-24 |
CGCAGAG | 42155 | 0.0 | 28.231747 | 15-19 |
AGTACAT | 42020 | 0.0 | 28.197214 | 20-24 |
GCAGAGT | 42245 | 0.0 | 28.12729 | 15-19 |
GAGTACA | 41835 | 0.0 | 27.805584 | 20-24 |