FastQCFastQC Report
Sun 19 Mar 2023
SRR4895952_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895952_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1820502
Sequences flagged as poor quality0
Sequence length150
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG178730.9817621732906638No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC136340.7489143104484367No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA63340.34792601161657605No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTAAGCGACTAAGCGTAC53730.29513837392103937No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC32500.17852218783610235No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA26340.14468536700316725No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG25460.1398515354556051No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCTTTCCGGCGGTGACGAC23840.13095289101577476No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT21050.11562744781384475No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA20690.11364997127166024No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC18740.10293864000149408No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA513550.0138.642038
AAGCAGT515450.0137.950361
GTGGTAT516900.0137.659936
GTATCAA517850.0137.532539
TGGTATC518950.0137.171637
AGCAGTG521650.0136.20032
CAGTGGT524000.0135.79474
AGTGGTA526000.0135.305745
GCAGTGG529450.0134.27543
CAACGCA510600.028.53160510-14
TCAACGC511700.028.4815310-14
GTACATG510800.028.32920620-24
ATCAACG515250.028.25455510-14
TACATGG512650.028.22135520-24
AGAGTAC515400.028.168115-19
CGCAGAG517350.028.09533115-19
CAGAGTA517450.028.0509415-19
AGTACAT517400.027.96226920-24
AACGCAG522600.027.88197310-14
GCAGAGT520950.027.84313215-19