Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895952_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1820502 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 17873 | 0.9817621732906638 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 13634 | 0.7489143104484367 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 6334 | 0.34792601161657605 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTAAGCGACTAAGCGTAC | 5373 | 0.29513837392103937 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 3250 | 0.17852218783610235 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 2634 | 0.14468536700316725 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 2546 | 0.1398515354556051 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCTTTCCGGCGGTGACGAC | 2384 | 0.13095289101577476 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 2105 | 0.11562744781384475 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 2069 | 0.11364997127166024 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC | 1874 | 0.10293864000149408 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 51355 | 0.0 | 138.64203 | 8 |
AAGCAGT | 51545 | 0.0 | 137.95036 | 1 |
GTGGTAT | 51690 | 0.0 | 137.65993 | 6 |
GTATCAA | 51785 | 0.0 | 137.53253 | 9 |
TGGTATC | 51895 | 0.0 | 137.17163 | 7 |
AGCAGTG | 52165 | 0.0 | 136.2003 | 2 |
CAGTGGT | 52400 | 0.0 | 135.7947 | 4 |
AGTGGTA | 52600 | 0.0 | 135.30574 | 5 |
GCAGTGG | 52945 | 0.0 | 134.2754 | 3 |
CAACGCA | 51060 | 0.0 | 28.531605 | 10-14 |
TCAACGC | 51170 | 0.0 | 28.48153 | 10-14 |
GTACATG | 51080 | 0.0 | 28.329206 | 20-24 |
ATCAACG | 51525 | 0.0 | 28.254555 | 10-14 |
TACATGG | 51265 | 0.0 | 28.221355 | 20-24 |
AGAGTAC | 51540 | 0.0 | 28.1681 | 15-19 |
CGCAGAG | 51735 | 0.0 | 28.095331 | 15-19 |
CAGAGTA | 51745 | 0.0 | 28.05094 | 15-19 |
AGTACAT | 51740 | 0.0 | 27.962269 | 20-24 |
AACGCAG | 52260 | 0.0 | 27.881973 | 10-14 |
GCAGAGT | 52095 | 0.0 | 27.843132 | 15-19 |