Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895938_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1526471 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 17645 | 1.1559341775900098 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 13447 | 0.8809207642988305 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 4950 | 0.32427736917373473 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4391 | 0.2876569551599736 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 3474 | 0.22758375363829383 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTAAGCGACTAAGCGTAC | 2837 | 0.1858535144133102 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 2386 | 0.15630824299970322 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 40685 | 0.0 | 138.51137 | 8 |
AAGCAGT | 40770 | 0.0 | 138.17911 | 1 |
GTGGTAT | 40900 | 0.0 | 137.67763 | 6 |
TGGTATC | 41105 | 0.0 | 137.1136 | 7 |
GTATCAA | 41175 | 0.0 | 136.88051 | 9 |
CAGTGGT | 41795 | 0.0 | 134.88443 | 4 |
AGCAGTG | 41840 | 0.0 | 134.59373 | 2 |
AGTGGTA | 41935 | 0.0 | 134.29677 | 5 |
GCAGTGG | 42215 | 0.0 | 133.36401 | 3 |
CAACGCA | 40670 | 0.0 | 28.420988 | 10-14 |
TCAACGC | 40655 | 0.0 | 28.417305 | 10-14 |
ATCAACG | 40725 | 0.0 | 28.318956 | 10-14 |
AGAGTAC | 40885 | 0.0 | 28.162905 | 15-19 |
GTACATG | 40760 | 0.0 | 28.160578 | 20-24 |
CAGAGTA | 40970 | 0.0 | 28.118534 | 15-19 |
TACATGG | 40870 | 0.0 | 28.028412 | 20-24 |
CGCAGAG | 41195 | 0.0 | 28.013891 | 15-19 |
AGTACAT | 41135 | 0.0 | 27.882854 | 20-24 |
AACGCAG | 41755 | 0.0 | 27.685919 | 10-14 |
GAGTACA | 40690 | 0.0 | 27.550777 | 20-24 |