Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895933_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2151104 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 22215 | 1.0327255214066824 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 15716 | 0.7306015887655827 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 6573 | 0.30556402665793936 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 5762 | 0.26786245574365536 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5688 | 0.2644223617268156 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 4235 | 0.1968756508285978 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 4158 | 0.1932960935408051 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAACCTTAGCCAAACCAT | 3641 | 0.16926192317991134 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCGCAATAGATATAGTACC | 2390 | 0.11110573919252625 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCTTTCCGGCGGTGACGAC | 2339 | 0.1087348635863259 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 55390 | 0.0 | 135.14395 | 1 |
GGTATCA | 55780 | 0.0 | 134.31651 | 8 |
GTGGTAT | 55815 | 0.0 | 134.1162 | 6 |
GTATCAA | 56155 | 0.0 | 133.52213 | 9 |
TGGTATC | 56110 | 0.0 | 133.51372 | 7 |
CAGTGGT | 56780 | 0.0 | 131.86218 | 4 |
AGCAGTG | 56920 | 0.0 | 131.35947 | 2 |
AGTGGTA | 57165 | 0.0 | 130.96152 | 5 |
GCAGTGG | 57695 | 0.0 | 129.71977 | 3 |
TCAACGC | 55790 | 0.0 | 27.524399 | 10-14 |
TACATGG | 55415 | 0.0 | 27.523823 | 20-24 |
GTACATG | 55420 | 0.0 | 27.510946 | 20-24 |
CAACGCA | 55890 | 0.0 | 27.480307 | 10-14 |
ATCAACG | 55905 | 0.0 | 27.413689 | 10-14 |
AGAGTAC | 55775 | 0.0 | 27.376896 | 15-19 |
CAGAGTA | 55995 | 0.0 | 27.29248 | 15-19 |
CGCAGAG | 56370 | 0.0 | 27.1288 | 15-19 |
AGTACAT | 56345 | 0.0 | 27.046528 | 20-24 |
GCAGAGT | 56825 | 0.0 | 26.871033 | 15-19 |
GAGTACA | 55625 | 0.0 | 26.803793 | 20-24 |