FastQCFastQC Report
Sun 19 Mar 2023
SRR4895898_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895898_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2157379
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG629222.916594627091485No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC323781.5008025942590522No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAACCTTAGCCAAACCAT72630.3366585101644171No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA69330.32136217141262613No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT60960.28256509403308366No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCGCAATAGATATAGTACC51900.24056969127816671No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGCTTCCGGATAGCTGAAC34720.16093602468550958No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGCGGGGAGGTAGTGACGAAAA33250.1541222010597118No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCAGTTACTGAGAACTCATA31250.14485169272529305No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGCAGTTGACACAAAATAGACT25520.11829168634718332No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA23160.10735248651256919No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCGACAAACCTACCGAGCC23000.10661084584581569No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGTTTCAAAGTGGAGAACC23000.10661084584581569No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT574550.0140.105741
GGTATCA577900.0139.402028
TGGTATC579950.0138.872017
GTGGTAT580350.0138.701866
GTATCAA581600.0138.527569
CAGTGGT590550.0136.354974
AGCAGTG593900.0135.48032
GCAGTGG598250.0134.410953
AGTGGTA614050.0131.171775
ATCAACG576300.028.54776210-14
CAACGCA577150.028.5456410-14
AGAGTAC577150.028.46868915-19
TCAACGC578750.028.45925910-14
TACATGG576750.028.38540620-24
GTACATG579350.028.26298920-24
CAGAGTA581850.028.24862915-19
CGCAGAG581750.028.2089315-19
AGTACAT581850.028.1390820-24
ACATGGG579700.028.12420820-24
GCAGAGT584350.028.07355715-19