SRR4895890_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR4895890_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	84276
Sequences flagged as poor quality	0
Sequence length	150
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA	2221	2.6353884854525607	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT	2113	2.507238122359865	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTCTTGCTTCAAC	691	0.8199250083060421	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTAAGCGACTAAGCGTAC	441	0.523280649295173	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCCTGGAGATTGTCT	419	0.4971759457022165	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCATCTCCTCTAAC	402	0.47700412928947744	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTCTTGCTTCAACA	368	0.43666049646399924	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCATCTCCTCTAACT	334	0.39631686363852103	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCCTGGAGATTGTC	296	0.351226921068869	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGGAATTCTGGACATTAAT	262	0.3108832882433908	No Hit
ATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTAT	200	0.23731548720869522	No Hit
ATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCA	139	0.16493426361004318	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGTTTCAAAGTGGAGAACC	137	0.16256110873795623	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCAGTTACTGAGAACTCATA	137	0.16256110873795623	No Hit
ACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTA	133	0.15781479899378234	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA	133	0.15781479899378234	No Hit
AGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATATT	131	0.1554416441216954	No Hit
AGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAA	131	0.1554416441216954	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	125	0.14832217950543453	No Hit
CTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATA	124	0.14713560206939105	No Hit
AAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATA	123	0.14594902463334758	No Hit
TTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAA	122	0.1447624471973041	No Hit
CTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAA	117	0.1388295600170867	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAAAAGAAATCAACCGAGA	116	0.13764298258104324	No Hit
CTATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAA	113	0.13408325027291282	No Hit
ACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTAC	112	0.13289667283686932	No Hit
TATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAA	109	0.1293369405287389	No Hit
CACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACT	109	0.1293369405287389	No Hit
ATCACATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAAC	108	0.12815036309269542	No Hit
ATAAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTG	106	0.12577720822060848	No Hit
AACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCA	105	0.124590630784565	No Hit
CCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTA	104	0.12340405334852153	No Hit
ATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACAGC	104	0.12340405334852153	No Hit
CATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATC	104	0.12340405334852153	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTAAGCGACTAAGCGTACA	104	0.12340405334852153	No Hit
ATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCAT	102	0.12103089847643458	No Hit
CCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCATCATTAT	100	0.11865774360434761	No Hit
ATATTTTAAAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATG	100	0.11865774360434761	No Hit
TTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCAC	99	0.11747116616830414	No Hit
ATAACTAAAAATGGGATATATTCCTTATAAACTACTGCTAAGACAGCTAA	98	0.11628458873226066	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGTTACTGAGAACTCATAAG	94	0.11153827898808676	No Hit
AGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTTAGATA	93	0.11035170155204328	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGATTCCCCCAGTAGCGGC	93	0.11035170155204328	No Hit
AAGAGGCATCTATCACATAAGGCATCATTATAACTAAAAATGGGATATAT	92	0.10916512411599981	No Hit
CTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACCCCAGCACTT	91	0.10797854667995634	No Hit
ATGCTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCAT	91	0.10797854667995634	No Hit
CCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACAT	90	0.10679196924391286	No Hit
ACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAG	89	0.10560539180786938	No Hit
CCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACA	88	0.1044188143718259	No Hit
CATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAGGCA	87	0.10323223693578243	No Hit
AAGGCATCATTATAACTAAAAATGGGATATATTCCTTATAAACTACTGCT	86	0.10204565949973896	No Hit
CACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGC	86	0.10204565949973896	No Hit
CTCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTA	85	0.10085908206369548	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAGAAATCAACCGAGAT	85	0.10085908206369548	No Hit
TCATCCCTACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTAT	85	0.10085908206369548	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	1775	0.0	143.59438	1
AGTGGTA	1830	0.0	139.67213	5
GGTATCA	1835	0.0	139.29155	8
GCAGTGG	1835	0.0	138.89919	3
GTATCAA	1835	0.0	138.89919	9
CAGTGGT	1845	0.0	138.53659	4
AGCAGTG	1840	0.0	138.52174	2
GTGGTAT	1865	0.0	137.05093	6
TGGTATC	2015	0.0	126.84863	7
TAAATTC	145	0.0	28.800001	135-139
GGGGGGG	60	2.0008883E-11	28.800001	25-29
GGGATTC	25	5.3616485E-4	28.800001	25-29
CCGGGTT	65	1.8189894E-12	28.8	120-124
GGTAACG	90	0.0	28.8	85-89
CGCGGTT	70	0.0	28.8	135-139
TCTCTGG	70	0.0	28.8	75-79
GCGGTTA	70	0.0	28.8	135-139
GGCACGC	70	0.0	28.8	90-94
CTATATT	70	0.0	28.8	110-114
CGGTTAC	70	0.0	28.8	135-139

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content