Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895881_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 985081 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 14561 | 1.4781525580129957 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 8812 | 0.8945457277117314 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 4328 | 0.4393547332655894 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2364 | 0.23998026558222116 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 2357 | 0.23926966411899125 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 2263 | 0.22972730161276078 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 2140 | 0.21724101875886348 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAACCTTAGCCAAACCAT | 1266 | 0.12851735034986972 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 1060 | 0.10760536443196042 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCTTTCCGGCGGTGACGAC | 1038 | 0.1053720455475235 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 1026 | 0.10415387161055792 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 23540 | 0.0 | 140.0541 | 8 |
AAGCAGT | 23545 | 0.0 | 139.85506 | 1 |
GTGGTAT | 23700 | 0.0 | 139.0478 | 6 |
GTATCAA | 23765 | 0.0 | 138.81898 | 9 |
TGGTATC | 23905 | 0.0 | 137.8554 | 7 |
CAGTGGT | 24125 | 0.0 | 136.74748 | 4 |
AGCAGTG | 24070 | 0.0 | 136.74478 | 2 |
AGTGGTA | 24380 | 0.0 | 135.16953 | 5 |
GCAGTGG | 24470 | 0.0 | 134.62718 | 3 |
CGATAGG | 25 | 5.3699425E-4 | 28.79994 | 35-39 |
CAACGCA | 23605 | 0.0 | 28.48272 | 10-14 |
CAGAGTA | 23620 | 0.0 | 28.373184 | 15-19 |
AGAGTAC | 23605 | 0.0 | 28.372913 | 15-19 |
ATCAACG | 23685 | 0.0 | 28.356115 | 10-14 |
GTACATG | 23570 | 0.0 | 28.317291 | 20-24 |
TCAACGC | 23860 | 0.0 | 28.214525 | 10-14 |
TACATGG | 23660 | 0.0 | 28.20349 | 20-24 |
AGTACAT | 23675 | 0.0 | 28.17954 | 20-24 |
CGCAGAG | 23835 | 0.0 | 28.105165 | 15-19 |
GAGTACA | 23530 | 0.0 | 27.875845 | 20-24 |