Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895846_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3338748 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 46862 | 1.4035800246080266 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 33838 | 1.0134936808648032 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3680 | 0.1102209570773236 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAAGAGGACCTGATGACCAG | 3658 | 0.10956202744262221 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAGAGGACCTGATGACCA | 3590 | 0.10752533584445427 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 52035 | 0.0 | 140.51254 | 8 |
TGGTATC | 52120 | 0.0 | 140.32483 | 7 |
GTGGTAT | 52395 | 0.0 | 139.57457 | 6 |
GTATCAA | 52465 | 0.0 | 139.34718 | 9 |
AAGCAGT | 52785 | 0.0 | 138.57773 | 1 |
CAGTGGT | 53370 | 0.0 | 137.06404 | 4 |
AGCAGTG | 53715 | 0.0 | 136.18779 | 2 |
GCAGTGG | 54200 | 0.0 | 134.9957 | 3 |
AGTGGTA | 62625 | 0.0 | 116.751625 | 5 |
TCAACGC | 51705 | 0.0 | 28.624428 | 10-14 |
CAACGCA | 51785 | 0.0 | 28.588549 | 10-14 |
ATCAACG | 51670 | 0.0 | 28.585293 | 10-14 |
AGAGTAC | 51975 | 0.0 | 28.356594 | 15-19 |
TACATGG | 52020 | 0.0 | 28.3376 | 20-24 |
CGCAGAG | 52200 | 0.0 | 28.259195 | 15-19 |
CAGAGTA | 52390 | 0.0 | 28.181446 | 15-19 |
GTACATG | 52420 | 0.0 | 28.140596 | 20-24 |
AGTACAT | 52475 | 0.0 | 28.047985 | 20-24 |
GAGTACA | 52230 | 0.0 | 27.920391 | 20-24 |
GCAGAGT | 53330 | 0.0 | 27.69822 | 15-19 |