FastQCFastQC Report
Sun 19 Mar 2023
SRR4895841_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895841_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences602574
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA45490.7549280254375396No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG41870.6948524164666913No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG38130.6327853508448755No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC23150.38418517891578463No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGACTGCGATAGGAATCATGTC15910.2640339609740878No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGACTGCGATAGGAATCATGT9550.1584867584728183No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA7910.13127018424293116No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA127700.0117.522148
AAGCAGT128300.0117.245351
TGGTATC128650.0116.372547
GTGGTAT129250.0115.720126
GTATCAA130900.0114.6950459
AGCAGTG131100.0114.5848852
CAGTGGT130950.0114.43934
GCAGTGG133700.0112.2481463
AGTGGTA136150.0109.962015
CGACACA1300.061.341381
GCTATCC3500.051.78598145
GCTATTC2150.040.46532145
GCTAACG900.003627004332.222385145
GGCTATC4300.032.035046145
CCGATCT1000.006072414629.0001474
CGATAGG3700.027.43075435-39
TGCGATA3600.026.98490730-34
CGCAGAT7550.025.92685790-94
CATGGGG52800.025.46047625-29
GGTCGCG4350.025.33136250-54