Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895841_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 602574 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4549 | 0.7549280254375396 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 4187 | 0.6948524164666913 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3813 | 0.6327853508448755 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 2315 | 0.38418517891578463 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGACTGCGATAGGAATCATGTC | 1591 | 0.2640339609740878 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGACTGCGATAGGAATCATGT | 955 | 0.1584867584728183 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 791 | 0.13127018424293116 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12770 | 0.0 | 117.52214 | 8 |
AAGCAGT | 12830 | 0.0 | 117.24535 | 1 |
TGGTATC | 12865 | 0.0 | 116.37254 | 7 |
GTGGTAT | 12925 | 0.0 | 115.72012 | 6 |
GTATCAA | 13090 | 0.0 | 114.695045 | 9 |
AGCAGTG | 13110 | 0.0 | 114.584885 | 2 |
CAGTGGT | 13095 | 0.0 | 114.4393 | 4 |
GCAGTGG | 13370 | 0.0 | 112.248146 | 3 |
AGTGGTA | 13615 | 0.0 | 109.96201 | 5 |
CGACACA | 130 | 0.0 | 61.34138 | 1 |
GCTATCC | 350 | 0.0 | 51.78598 | 145 |
GCTATTC | 215 | 0.0 | 40.46532 | 145 |
GCTAACG | 90 | 0.0036270043 | 32.222385 | 145 |
GGCTATC | 430 | 0.0 | 32.035046 | 145 |
CCGATCT | 100 | 0.0060724146 | 29.000147 | 4 |
CGATAGG | 370 | 0.0 | 27.430754 | 35-39 |
TGCGATA | 360 | 0.0 | 26.984907 | 30-34 |
CGCAGAT | 755 | 0.0 | 25.926857 | 90-94 |
CATGGGG | 5280 | 0.0 | 25.460476 | 25-29 |
GGTCGCG | 435 | 0.0 | 25.331362 | 50-54 |