Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895835_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 648459 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 40 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7557 | 1.1653782274592535 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 4764 | 0.7346647976202042 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3830 | 0.5906310190775361 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 2575 | 0.3970952673954714 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATTCTATAGAAGAAATGCAA | 1257 | 0.1938441751907214 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATGTCTATGTTCATTCTATA | 1136 | 0.17518455291699245 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGAAGAAATGCAAACTATCA | 998 | 0.15390333081968174 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 835 | 0.12876681486416258 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATTGGTTGAATGTGTATCTA | 693 | 0.10686874574953852 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATGGAAACTCCCTGTAAACT | 684 | 0.10548083996058347 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 23310 | 0.0 | 127.793846 | 1 |
GGTATCA | 23510 | 0.0 | 126.419426 | 8 |
TGGTATC | 23615 | 0.0 | 125.76524 | 7 |
GTGGTAT | 23600 | 0.0 | 125.753006 | 6 |
GTATCAA | 23675 | 0.0 | 125.63022 | 9 |
AGCAGTG | 23775 | 0.0 | 125.11144 | 2 |
CAGTGGT | 23925 | 0.0 | 124.14524 | 4 |
AGTGGTA | 24125 | 0.0 | 123.10657 | 5 |
GCAGTGG | 24145 | 0.0 | 123.014084 | 3 |
TTGCCGC | 75 | 2.5491821E-5 | 48.334618 | 145 |
GTGCGGA | 45 | 0.009636606 | 48.334618 | 145 |
CGATAAG | 85 | 5.3385695E-5 | 42.648193 | 145 |
AAATATA | 2075 | 0.0 | 32.14543 | 145 |
GCGAATG | 125 | 5.151065E-4 | 29.00077 | 145 |
ACATGGG | 22700 | 0.0 | 26.088724 | 20-24 |
TAGTATC | 195 | 8.756962E-6 | 26.02232 | 7 |
CAACGCA | 23640 | 0.0 | 26.003448 | 10-14 |
TCAACGC | 23685 | 0.0 | 25.978529 | 10-14 |
ATCAACG | 23575 | 0.0 | 25.9583 | 10-14 |
AGAGTAC | 23610 | 0.0 | 25.928358 | 15-19 |