FastQCFastQC Report
Sun 19 Mar 2023
SRR4895835_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895835_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences648459
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA75571.1653782274592535No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG47640.7346647976202042No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG38300.5906310190775361No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC25750.3970952673954714No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGATTCTATAGAAGAAATGCAA12570.1938441751907214No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGATGTCTATGTTCATTCTATA11360.17518455291699245No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGAAGAAATGCAAACTATCA9980.15390333081968174No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA8350.12876681486416258No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGATTGGTTGAATGTGTATCTA6930.10686874574953852No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGATGGAAACTCCCTGTAAACT6840.10548083996058347No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT233100.0127.7938461
GGTATCA235100.0126.4194268
TGGTATC236150.0125.765247
GTGGTAT236000.0125.7530066
GTATCAA236750.0125.630229
AGCAGTG237750.0125.111442
CAGTGGT239250.0124.145244
AGTGGTA241250.0123.106575
GCAGTGG241450.0123.0140843
TTGCCGC752.5491821E-548.334618145
GTGCGGA450.00963660648.334618145
CGATAAG855.3385695E-542.648193145
AAATATA20750.032.14543145
GCGAATG1255.151065E-429.00077145
ACATGGG227000.026.08872420-24
TAGTATC1958.756962E-626.022327
CAACGCA236400.026.00344810-14
TCAACGC236850.025.97852910-14
ATCAACG235750.025.958310-14
AGAGTAC236100.025.92835815-19