Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895833_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 829136 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 52246 | 6.301258177186855 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 10319 | 1.2445485420968334 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9267 | 1.117669477624901 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 2405 | 0.290060979139731 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1694 | 0.20430906389301637 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1366 | 0.16474981185233784 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT | 1236 | 0.14907084000694698 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 1071 | 0.12917060651087398 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 45860 | 0.0 | 71.23079 | 1 |
AGTGGTA | 46985 | 0.0 | 69.38505 | 5 |
AGCAGTG | 47385 | 0.0 | 68.82294 | 2 |
TGGTATC | 47660 | 0.0 | 68.40236 | 7 |
GTGGTAT | 47645 | 0.0 | 68.39346 | 6 |
GGTATCA | 47875 | 0.0 | 68.29203 | 8 |
GTATCAA | 47990 | 0.0 | 68.2039 | 9 |
CAGTGGT | 47935 | 0.0 | 68.01815 | 4 |
GCAGTGG | 48165 | 0.0 | 67.61808 | 3 |
CGGTCTG | 315 | 0.0 | 50.633804 | 145 |
TGCGGCT | 650 | 0.0 | 37.92224 | 145 |
CCGCAAG | 845 | 0.0 | 36.892677 | 145 |
CATTCCG | 245 | 1.9699655E-9 | 29.59297 | 3 |
CGTGGGG | 305 | 7.1122486E-10 | 26.146963 | 145 |
CACGGGA | 280 | 8.194547E-9 | 25.892286 | 145 |
CGGAGCC | 340 | 8.913048E-11 | 25.587671 | 145 |
TACGCAC | 255 | 0.0 | 25.586128 | 50-54 |
ATCATTC | 695 | 0.0 | 25.03995 | 1 |
CATGGGG | 6195 | 0.0 | 24.482403 | 25-29 |
CGACCTA | 255 | 0.0 | 23.880674 | 45-49 |