Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895829_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 919142 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 12331 | 1.3415772535690893 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8203 | 0.8924627533068883 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3462 | 0.37665562013268894 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1845 | 0.20073068143986456 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1600 | 0.17407538769852754 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC | 1076 | 0.11706569822725976 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGTTTCAAAGTGGAGAACC | 1035 | 0.11260501641748501 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 20710 | 0.0 | 104.39318 | 1 |
GGTATCA | 21185 | 0.0 | 102.258766 | 8 |
GTGGTAT | 21060 | 0.0 | 102.24604 | 6 |
AGCAGTG | 21250 | 0.0 | 101.66103 | 2 |
GTATCAA | 21345 | 0.0 | 101.52069 | 9 |
CAGTGGT | 21340 | 0.0 | 100.960434 | 4 |
AGTGGTA | 21350 | 0.0 | 100.89667 | 5 |
TGGTATC | 21445 | 0.0 | 100.57947 | 7 |
GCAGTGG | 21790 | 0.0 | 98.70903 | 3 |
CGTTAGT | 45 | 0.009637976 | 48.334496 | 145 |
CGGTCTG | 290 | 0.0 | 37.5009 | 145 |
TGCGGCT | 490 | 0.0 | 29.592546 | 145 |
CGACCTA | 305 | 0.0 | 25.195955 | 45-49 |
TACGCAC | 310 | 0.0 | 24.32184 | 50-54 |
CATGGGG | 6050 | 0.0 | 24.110798 | 25-29 |
AAACCGC | 805 | 0.0 | 23.955793 | 85-89 |
ATGGGAG | 3475 | 0.0 | 23.241781 | 25-29 |
GCACCTC | 415 | 4.3655746E-11 | 22.716333 | 2 |
GAAACCG | 850 | 0.0 | 22.516964 | 85-89 |
TCCGGCG | 315 | 0.0 | 22.09529 | 35-39 |