Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895827_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1606056 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 17366 | 1.0812823463191819 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 11823 | 0.7361511678297643 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 4480 | 0.2789441962173175 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 2684 | 0.1671174604123393 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT | 2491 | 0.15510044481637003 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 2373 | 0.14775325393386035 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2128 | 0.1324984932032258 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1858 | 0.11568712423477139 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 37520 | 0.0 | 118.657936 | 1 |
GGTATCA | 37565 | 0.0 | 118.331024 | 8 |
GTGGTAT | 37525 | 0.0 | 117.89685 | 6 |
TGGTATC | 37920 | 0.0 | 116.97468 | 7 |
GTATCAA | 38090 | 0.0 | 116.860435 | 9 |
AGCAGTG | 38430 | 0.0 | 115.71612 | 2 |
AGTGGTA | 38280 | 0.0 | 115.66986 | 5 |
CAGTGGT | 38390 | 0.0 | 115.44364 | 4 |
GCAGTGG | 39285 | 0.0 | 112.79512 | 3 |
TGCGGCT | 1015 | 0.0 | 35.71422 | 145 |
CGGTCTG | 530 | 0.0 | 30.09428 | 145 |
GATTCGT | 290 | 1.2732926E-11 | 30.004614 | 4 |
CGATAGG | 330 | 0.0 | 26.364077 | 35-39 |
CATGGGG | 13050 | 0.0 | 25.47757 | 25-29 |
ACATGGG | 36025 | 0.0 | 24.842144 | 20-24 |
CAACGCA | 37725 | 0.0 | 24.808104 | 10-14 |
TCAACGC | 37770 | 0.0 | 24.778547 | 10-14 |
GTACATG | 37510 | 0.0 | 24.6975 | 20-24 |
TACATGG | 37300 | 0.0 | 24.642178 | 20-24 |
ATCAACG | 37900 | 0.0 | 24.532885 | 10-14 |