Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895821_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 645598 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 28019 | 4.340007249093089 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5861 | 0.9078404827772082 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 4850 | 0.7512414846390478 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3992 | 0.6183414446760988 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 2109 | 0.32667387445438184 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCACGATGGCTCACGCCT | 723 | 0.11198919451423331 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGGCGCGGTGGCTCACG | 708 | 0.1096657672421538 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 25555 | 0.0 | 76.68988 | 1 |
AGCAGTG | 26515 | 0.0 | 73.92471 | 2 |
AGTGGTA | 26405 | 0.0 | 73.90312 | 5 |
GTGGTAT | 26585 | 0.0 | 73.47888 | 6 |
CAGTGGT | 26645 | 0.0 | 73.23745 | 4 |
GTATCAA | 26865 | 0.0 | 73.16055 | 9 |
TGGTATC | 26750 | 0.0 | 73.13407 | 7 |
GGTATCA | 26850 | 0.0 | 73.10474 | 8 |
GCAGTGG | 26880 | 0.0 | 72.65112 | 3 |
CTCACCG | 110 | 9.9344106E-8 | 46.14669 | 3 |
CCGACGC | 70 | 0.0010568097 | 41.425007 | 145 |
AAATATA | 1775 | 0.0 | 34.306908 | 145 |
CTCGAAT | 95 | 0.004722685 | 30.530785 | 6 |
GCCCCAA | 650 | 0.0 | 28.997507 | 145 |
TGCGCAA | 100 | 0.0060754353 | 28.997507 | 145 |
ATCTAGG | 125 | 5.1544356E-4 | 28.997505 | 145 |
CGGTCTG | 175 | 1.8189894E-12 | 28.997505 | 145 |
CGGAGCC | 230 | 3.486639E-8 | 28.367125 | 145 |
CCGCAAG | 445 | 0.0 | 26.065174 | 145 |
AGCGCAT | 140 | 9.99576E-4 | 25.890629 | 145 |