Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895790_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 564987 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 56005 | 9.912617458454797 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 8572 | 1.5172030506896619 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3191 | 0.5647917562704983 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 2502 | 0.44284204769313273 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 1415 | 0.25044824040199154 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1158 | 0.20496046811696556 | No Hit |
AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA | 1056 | 0.18690695538127425 | No Hit |
AGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG | 792 | 0.1401802165359557 | No Hit |
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA | 652 | 0.11540088533010494 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 631 | 0.11168398564922732 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGATTAGGAGATCGGAAGAGCAC | 608 | 0.10761309552255185 | No Hit |
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG | 595 | 0.1053121576248657 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 44355 | 0.0 | 66.781136 | 1 |
AGCAGTG | 45955 | 0.0 | 64.42885 | 2 |
AGTGGTA | 46120 | 0.0 | 64.19834 | 5 |
GGTATCA | 46730 | 0.0 | 63.73266 | 8 |
GTATCAA | 46815 | 0.0 | 63.67889 | 9 |
GTGGTAT | 46780 | 0.0 | 63.354584 | 6 |
CAGTGGT | 46815 | 0.0 | 63.276253 | 4 |
TGGTATC | 46865 | 0.0 | 63.25515 | 7 |
GCAGTGG | 47365 | 0.0 | 62.44965 | 3 |
TAGATCG | 45 | 0.009634541 | 48.336433 | 145 |
CGGTCTG | 90 | 7.475476E-5 | 40.28036 | 145 |
CGTCGGC | 90 | 0.0036257668 | 32.22429 | 145 |
GCCGGCT | 425 | 0.0 | 30.707851 | 145 |
CGTGGGC | 410 | 0.0 | 28.294497 | 145 |
CACGGCT | 185 | 5.807371E-6 | 27.434189 | 145 |
CACGGGC | 135 | 8.075314E-4 | 26.85357 | 145 |
TGCGGGC | 145 | 0.0012253246 | 25.001604 | 145 |
CACGGGT | 205 | 1.2883314E-5 | 24.757685 | 145 |
GGGTATC | 295 | 1.425542E-8 | 24.575672 | 7 |
GGGGTAT | 295 | 1.425542E-8 | 24.575672 | 6 |