Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895789_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 727990 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 12364 | 1.6983749776782648 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8343 | 1.1460322257173863 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2071 | 0.2844819296968365 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT | 862 | 0.11840821989313041 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCTTTTACCTCGTTGCACTGC | 857 | 0.11772139727194056 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 853 | 0.11717193917498868 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 16360 | 0.0 | 89.74375 | 1 |
AGTGGTA | 16320 | 0.0 | 89.60214 | 5 |
GGTATCA | 16650 | 0.0 | 88.13105 | 8 |
GTGGTAT | 16605 | 0.0 | 87.93327 | 6 |
AGCAGTG | 16720 | 0.0 | 87.59465 | 2 |
CAGTGGT | 16725 | 0.0 | 87.438416 | 4 |
TGGTATC | 16780 | 0.0 | 87.14583 | 7 |
GTATCAA | 16930 | 0.0 | 86.71034 | 9 |
GCAGTGG | 17055 | 0.0 | 85.61902 | 3 |
CGGTCTG | 245 | 0.0 | 38.468914 | 145 |
GCCCCAA | 810 | 0.0 | 26.851522 | 145 |
TACGCAC | 315 | 0.0 | 25.315758 | 50-54 |
GGTCTGA | 450 | 0.0 | 24.166368 | 145 |
CGACCTA | 335 | 0.0 | 23.371243 | 45-49 |
CATGGGG | 4095 | 0.0 | 23.229637 | 25-29 |
TGCGGCT | 505 | 0.0 | 22.970013 | 145 |
AGCCGTA | 160 | 0.0021756098 | 22.654415 | 9 |
TCTCGCA | 375 | 0.0 | 21.269035 | 70-74 |
ATAGGCG | 160 | 0.0 | 19.937254 | 100-104 |
GGCGATA | 195 | 0.0 | 19.334425 | 105-109 |