Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895785_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 709144 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 21289 | 3.0020701014180475 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4974 | 0.701409022709069 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 3678 | 0.5186534751757048 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1207 | 0.1702052051487427 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 1157 | 0.16315445100007897 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCTTTTACCTCGTTGCACTGC | 761 | 0.10731247814266215 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC | 746 | 0.10519725189806302 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 20990 | 0.0 | 72.05347 | 1 |
AGTGGTA | 21445 | 0.0 | 70.316895 | 5 |
GTGGTAT | 21455 | 0.0 | 70.18274 | 6 |
GGTATCA | 21595 | 0.0 | 69.96275 | 8 |
AGCAGTG | 21640 | 0.0 | 69.92271 | 2 |
GTATCAA | 21710 | 0.0 | 69.558754 | 9 |
TGGTATC | 21755 | 0.0 | 69.24825 | 7 |
CAGTGGT | 21955 | 0.0 | 68.6553 | 4 |
GCAGTGG | 22350 | 0.0 | 67.506805 | 3 |
AGCGCAT | 90 | 7.4818214E-5 | 40.27633 | 145 |
CGGTCTG | 350 | 0.0 | 35.21302 | 145 |
GGTCTGA | 530 | 0.0 | 31.461132 | 145 |
CGAGCCG | 140 | 2.7462338E-5 | 31.070309 | 145 |
CGCGAAA | 255 | 0.0 | 27.29429 | 90-94 |
CCGCAAG | 830 | 0.0 | 27.077337 | 145 |
CGCTGTT | 375 | 0.0 | 27.065691 | 145 |
CCGCGAA | 270 | 0.0 | 26.314981 | 90-94 |
TACGCAC | 335 | 0.0 | 25.103573 | 50-54 |
CGACCTA | 340 | 0.0 | 24.308632 | 45-49 |
TCTCGCA | 375 | 0.0 | 23.200474 | 70-74 |