Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895783_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1119153 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 36657 | 3.2754234675687774 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9846 | 0.8797724707881763 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 5775 | 0.5160152365226202 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 33105 | 0.0 | 70.54133 | 1 |
GGTATCA | 33450 | 0.0 | 69.810486 | 8 |
GTATCAA | 33690 | 0.0 | 69.37463 | 9 |
AGTGGTA | 33550 | 0.0 | 69.28137 | 5 |
GTGGTAT | 33600 | 0.0 | 69.088875 | 6 |
TGGTATC | 33685 | 0.0 | 69.04368 | 7 |
AGCAGTG | 34580 | 0.0 | 67.439476 | 2 |
CAGTGGT | 34670 | 0.0 | 67.10008 | 4 |
GCAGTGG | 35215 | 0.0 | 66.14399 | 3 |
CATGGGG | 5335 | 0.0 | 22.258797 | 25-29 |
TACGCAC | 240 | 0.0 | 21.14412 | 50-54 |
CGGAGCC | 415 | 1.0932126E-9 | 20.962345 | 145 |
CGACCTA | 235 | 0.0 | 20.36078 | 45-49 |
GCGATAG | 195 | 0.0 | 18.59073 | 105-109 |
CATTCCG | 235 | 9.1861375E-4 | 18.515095 | 3 |
CGTGGGC | 725 | 0.0 | 17.998701 | 145 |
GCCCCAA | 855 | 0.0 | 17.805735 | 145 |
ATGGGAG | 2640 | 0.0 | 17.684961 | 25-29 |
TCCGGCG | 255 | 0.0 | 17.626652 | 35-39 |
GAGGTAT | 350 | 4.1632637E-5 | 16.570974 | 6 |