Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895780_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1015989 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 13841 | 1.3623178991111122 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7214 | 0.7100470575960961 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2161 | 0.2126991532388638 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1164 | 0.1145681695372686 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 18545 | 0.0 | 85.42211 | 1 |
GGTATCA | 18620 | 0.0 | 84.92229 | 8 |
AGTGGTA | 18610 | 0.0 | 84.851036 | 5 |
GTGGTAT | 18605 | 0.0 | 84.67899 | 6 |
GTATCAA | 18830 | 0.0 | 84.159424 | 9 |
TGGTATC | 18865 | 0.0 | 83.588806 | 7 |
CAGTGGT | 19075 | 0.0 | 82.79073 | 4 |
AGCAGTG | 19185 | 0.0 | 82.39164 | 2 |
GCAGTGG | 19700 | 0.0 | 80.01691 | 3 |
CGGTCTG | 230 | 0.0 | 47.281116 | 145 |
CGACCTA | 335 | 0.0 | 22.506754 | 45-49 |
TACGCAC | 345 | 0.0 | 21.853739 | 50-54 |
TGCGGCT | 700 | 0.0 | 21.749313 | 145 |
CATGGGG | 5205 | 0.0 | 21.451752 | 25-29 |
TGACGAC | 400 | 0.0 | 19.574383 | 40-44 |
CGGCGGT | 420 | 0.0 | 18.641352 | 35-39 |
ACATGGG | 16990 | 0.0 | 18.587406 | 20-24 |
TACATGG | 17860 | 0.0 | 18.501934 | 20-24 |
AGTACAT | 18025 | 0.0 | 18.421057 | 20-24 |
GTACATG | 18075 | 0.0 | 18.402185 | 20-24 |