Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895777_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1100491 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 20387 | 1.8525367313317418 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9768 | 0.8876038059375315 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 3312 | 0.3009565730205881 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1401 | 0.12730681123244078 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1155 | 0.10495315272910002 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 23260 | 0.0 | 81.0162 | 1 |
GGTATCA | 23545 | 0.0 | 79.778305 | 8 |
AGTGGTA | 23565 | 0.0 | 79.502464 | 5 |
GTGGTAT | 23600 | 0.0 | 79.254486 | 6 |
GTATCAA | 23735 | 0.0 | 79.23131 | 9 |
CAGTGGT | 23890 | 0.0 | 78.390564 | 4 |
AGCAGTG | 24015 | 0.0 | 78.28445 | 2 |
TGGTATC | 23935 | 0.0 | 78.17551 | 7 |
GCAGTGG | 24635 | 0.0 | 76.01992 | 3 |
CGGTCTG | 340 | 0.0 | 40.5145 | 145 |
CGGAGCC | 455 | 0.0 | 31.867973 | 145 |
TACGCAC | 325 | 0.0 | 24.984262 | 50-54 |
CGACCTA | 305 | 0.0 | 24.720066 | 45-49 |
CCGCAAG | 1005 | 0.0 | 23.084463 | 145 |
CCGCGAA | 275 | 0.0 | 21.61709 | 90-94 |
CATGGGG | 5330 | 0.0 | 21.41081 | 25-29 |
GTCGGTA | 125 | 0.0 | 20.878946 | 90-94 |
CGCGAAA | 285 | 0.0 | 20.858597 | 90-94 |
TCGTCGG | 140 | 0.0 | 19.677578 | 90-94 |
GTTCTCG | 310 | 0.0 | 19.176973 | 110-114 |