Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895775_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 633290 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 23762 | 3.7521514629948363 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5563 | 0.8784285240569092 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 3270 | 0.5163511187607573 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAA | 909 | 0.14353613668303622 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 761 | 0.12016611662903252 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 22355 | 0.0 | 66.78342 | 1 |
AGTGGTA | 22660 | 0.0 | 65.78333 | 5 |
GTGGTAT | 22675 | 0.0 | 65.70265 | 6 |
GGTATCA | 22765 | 0.0 | 65.665825 | 8 |
GTATCAA | 22820 | 0.0 | 65.63463 | 9 |
TGGTATC | 22775 | 0.0 | 65.446 | 7 |
CAGTGGT | 23015 | 0.0 | 64.737144 | 4 |
AGCAGTG | 23155 | 0.0 | 64.43967 | 2 |
GCAGTGG | 23860 | 0.0 | 62.505257 | 3 |
CGGTCTG | 155 | 1.4551915E-11 | 46.775772 | 145 |
CGCAAGG | 295 | 1.4253601E-8 | 24.577103 | 145 |
CCGCAAG | 475 | 0.0 | 24.421877 | 145 |
ATGGGGG | 1950 | 0.0 | 21.490808 | 25-29 |
CGCGAAA | 135 | 0.0 | 21.481867 | 90-94 |
CATGGGG | 4525 | 0.0 | 20.82976 | 25-29 |
TTAGCGC | 70 | 8.755342E-8 | 20.71335 | 40-44 |
CGACCTA | 120 | 0.0 | 20.54074 | 45-49 |
TACGCAC | 130 | 0.0 | 20.076332 | 50-54 |
ATGGGGC | 1365 | 0.0 | 19.865454 | 25-29 |
ACTATCG | 100 | 5.4387783E-10 | 18.850637 | 140-144 |