Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895769_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1903696 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 23135 | 1.2152675637286625 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 17154 | 0.9010892495440449 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 14297 | 0.7510127667442701 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 7334 | 0.3852505862280532 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 3552 | 0.18658441263731182 | No Hit |
TGTCTTGATGACTGCTGATTTTCTGGAATGGAAAATTAAGTTGTTTAGTG | 2015 | 0.10584673183113269 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 33620 | 0.0 | 95.214005 | 1 |
GGTATCA | 34055 | 0.0 | 93.928986 | 8 |
GTGGTAT | 34065 | 0.0 | 93.262924 | 6 |
GTATCAA | 34450 | 0.0 | 92.88677 | 9 |
AGCAGTG | 34605 | 0.0 | 92.33863 | 2 |
TGGTATC | 34505 | 0.0 | 92.19972 | 7 |
CAGTGGT | 34650 | 0.0 | 91.860565 | 4 |
GCAGTGG | 35855 | 0.0 | 88.712685 | 3 |
AGTGGTA | 36460 | 0.0 | 87.26052 | 5 |
TTCACGC | 510 | 0.0 | 48.33665 | 1 |
TCACGCA | 555 | 0.0 | 44.418633 | 2 |
CGGTCTG | 420 | 0.0 | 39.70198 | 145 |
AAATATA | 5710 | 0.0 | 37.07493 | 145 |
AGGTATC | 530 | 0.0 | 30.094824 | 7 |
GAGGTAT | 535 | 0.0 | 28.458403 | 6 |
CGGAGCC | 830 | 0.0 | 27.951525 | 145 |
CCGCAAG | 1305 | 0.0 | 27.221945 | 145 |
GAAACCG | 3055 | 0.0 | 24.631844 | 85-89 |
AAACCGC | 3000 | 0.0 | 24.551794 | 85-89 |
CATGGGG | 9875 | 0.0 | 24.419 | 25-29 |